Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0833 ATGGGATCAGAGAGTGCGGCTCCAATGGTTGAGACATCAAAAAACAGATCTTCTTCTGATAAAATGAACCAAGGGAAAGTCCCCAGGAAAATTCACAAGGCTGAAAGGGAGAAAATGAAGCGTGAGCATTTGAACGATCTCTTTCTTGATCTTGCCAGTGCACTTGATCTAAATGAGAACAATGGAAAGGCTTCTATACTGTGTGAAACTGCCAGGTTGCTAAAAGACTTGCTCAGTCAGATCGAGTCCCTCAAGAAAGAGAATGTCACTCTGTTGTCTGAATCTAATTATATGACCATGGAGAAAAATGAGCTGAAGGAGGAGAATTGTAGCCTAGAAACCCAAATTGAGAAATTTCAAGGTCAGATACAGGCAAGACTGGCTCAATGTAAACCTGACCTGAATGTACCTCCCCATTTGGAACTTGAGCCACTGGAGCAGACAAATTTTCCTGGACAGAATCTCCAATTGCATACCATAGAACCTAACTTGCAGCAAGGATCTGCGATTTTGGTTGTCCCCTGTAATCCTGATCTTCCACCTTCTTTTCCAGCTCCTAATGTTACCGGGGTCATGCCGAAATCTACATCTGTTGTCAGTAAACCACATGCCAGGTATCCCACACCCGCAGATTCATGGCCATCACAACTGCTTGGAAAGCAACCAACTTCAAGTTGA 678 0.4366 MGSESAAPMVETSKNRSSSDKMNQGKVPRKIHKAEREKMKREHLNDLFLDLASALDLNENNGKASILCETARLLKDLLSQIESLKKENVTLLSESNYMTMEKNELKEENCSLETQIEKFQGQIQARLAQCKPDLNVPPHLELEPLEQTNFPGQNLQLHTIEPNLQQGSAILVVPCNPDLPPSFPAPNVTGVMPKSTSVVSKPHARYPTPADSWPSQLLGKQPTSS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0833 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 29 104 IPR036638 GO:0046983
Gso17g0833 225 Gene3D - 18 95 IPR036638 GO:0046983
Gso17g0833 225 PANTHER TRANSCRIPTION FACTOR BHLH47 6 224 - -
Gso17g0833 225 MobiDBLite consensus disorder prediction 1 36 - -
Gso17g0833 225 PANTHER TRANSCRIPTION FACTOR BHLH47 6 224 - -
Gso17g0833 225 MobiDBLite consensus disorder prediction 184 225 - -
Gso17g0833 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983
Gso17g0833 225 Coils Coil 74 94 - -
Gso17g0833 225 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0833 Gso-Chr17 7817080 7819457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0833 15 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 46.188 6.38e-56 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0833 - - gmx:100809240 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0228 5 2401289 2403464 Gso17g0833 17 7817080 7819457 GST