Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0827 ATGGCAAATCCTGTTCCCGCGAGCTTCTGGACTCAAGCAAACGCGCTTCTTCGCAAGAATCTAACCTTCCACAAACGGAACGTGAAAACGAACGCTCAGCTGGTACTGTTCCCGCTGATCCTCTTCTTGCTGCTTTTCGCGCTCCAACGCCTCATCGATACGCAATTCGGTGGCTCCATCTTCAAATGCGGCTGCGTCTGCGCCAACAACACAACAACAACCACCCAAGAACAACACTCTCACTGCCCTGACTCAGAAAAAGTTTGTGGGATCCACTATTCCGATTCCATTCAAGCTGCCTTCTGCGCCATTCCCAACCCCATCGAGTGGCCACCGCTCCTGCAGCTTCCGGCTCCGCCCAACCGCGCCGCGCGAACCCCTTCTCTTCCCCTTCCGGATTTTCCCGATGCCTCGTGCCGGAGAACCGACTCGTGTCCTCTTACTCTGCTCTTCACCGCACTCAATCACTCCTTTGCGGAAACTGTGTCTGCTAATATGTTTGGGAGTGCCTTGAACGTAAGTGATTTCGGTAGTGATTTCTTGGCTAGTTTGGCCATGAATGTACTGGGATCTGAATCAACGCCTGGGAGTAACAATTTTATTGAACCTGCTTTCTCTTCTGGTCTCCCCATTTATTATCTACAAACAAAGTGCACAGACACAGAGAAATCTGGACTCTCCTTTCCCTCGCTGCCGGCAGCAGACAATGAGATCAAGTGTGATCAGGCTCTAAATTTATGGCGTAATAGTTCTTCTGAGATCAACAGTGAACTATATAAAGGTTATCAAAGAGGTAACTCAGATGGACAAGTCAATGAGATAGTTTCAGCTTTTGATTTTCTAAATTCGAACGGGAATGGATATAATGTCTGTATATGGTACAACTCAACCTATGAGCGACACACAGGATTTGGTCCTAGTAGTGTGTTATTGCGGATTCCTCGCTCTATAAATCTGTTATCAAATTCCTACTTGCAGTTTCTGCTTGGACCTGGAACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCAGCTTTAACCTTGAGTTATCTTCTCTTCTGGGCACTATGTTCTTTACATGGGTCATCCTGCAACTTTTTCCTGTTGTTCTGACATCACTAGTATATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTTCATATGGTTATTTTCTTGCCATATCAGTAATCTACATGTTGTGTTTTGTGATATTTGGCTCACTCTTAGGATTAAAAATCTTCACAATCAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAACTTACAAATTGCACTGGCATTTATGGTGGCTTCTATATTTTCAAATGTTAAGACTGCTACAGTAACTGCATATATTGGTGTCTTTGGAACCGGGTTATTAGCTGTCTTTCTTTTCCAATTCTTTGTTCAAAATACATCATTTCCAAGAGGGTGGATAATTGTTATGGAGTTTTATCCTGGGTTTGCTTTATATCGTGGGTTGTATGAGTTAGCACAATTTTCCTTTCAAGGGAGTAGTTCGGGGTCAGGTGGTATGAAATGGCAGAATCTGAGTGAAAGCACCAATGGCATGAAAGAGGTCTTAATTATCATGTTTGTTGAGTGGATAGTGATGCTTTTTGCTGCCTTCTACGTTGACCAAGTATTGTTGTCAGGAAGTAGGAAAAGTCCGCTTTTTTACTTGAAAGGATTTCAGAAAAGGCCTCCTTTCCAAAAGCTTGATGCCCAAATGCAGGGGTCAAAAGTATTCTCTCAAACGGAGAAACCAGATGTCATCCAAGAGAAGGAGAAGGTGGAGCAACTGCTACTTGAACCATCTATTAATCATACAATTGTATGTGATGATGTGAAAAAGGTCTATCCAGGGAGGGATGGAAATCCAGATAAATATGCAGTTAGAGGGTTGTTTCTTTTTGTGCCTCAAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGAGCTGGGAAGACCTCTTTTATCAACATGATGATTGGTCTCACAAAGCCAACCTCTGGTAGGGCGTTTGTTCAAGGCTTGGACATAAGAACTCAAATGGATGAAATATATACTACCATGGGTGTATGCCCACAGCATGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGCTCACTCTTGACACAAGCAGTAGAAGAATCTTTGATGAGTTTAAACCTTTTTCATGGAGGAGTTGCTGATAAACAAGTTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCGTTGATTGGGGATCCTAGAGTTATTTACATGGATGAGCCAAGTTCCGGGTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCGTGCAAAACAGAACCGTGCAATCATTCTCACCACACATTCCATGGAAGAGGCAGAAGCCTTATGTGATCGATTGGGAATATTTGTAAATGGTAGCTTGCAATGTGTAGGAAATGCAAAGGAGCTGAAAGAAAGATATGGAGGAACTTACGTGTTCACGATGACAACATCTTCGGATCATGAAAAAGATGTGGAGAACATGGTGCAGAAACTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACTCAGAAGTTTGAGTTGCCAAAAGAGGATGTTAGAATAGCAGATGTATTCCAAGCTGTTGATGCTGCCAAGAGAAACTTCACCGTTTCTGCATGGGGTCTAGTTGACACCACATTGGAAGATGTCTTCATTAAGGTTGCGCGTGAGGCTCAGGCATTTGACACCTTGTCATAA 2865 0.4279 MANPVPASFWTQANALLRKNLTFHKRNVKTNAQLVLFPLILFLLLFALQRLIDTQFGGSIFKCGCVCANNTTTTTQEQHSHCPDSEKVCGIHYSDSIQAAFCAIPNPIEWPPLLQLPAPPNRAARTPSLPLPDFPDASCRRTDSCPLTLLFTALNHSFAETVSANMFGSALNVSDFGSDFLASLAMNVLGSESTPGSNNFIEPAFSSGLPIYYLQTKCTDTEKSGLSFPSLPAADNEIKCDQALNLWRNSSSEINSELYKGYQRGNSDGQVNEIVSAFDFLNSNGNGYNVCIWYNSTYERHTGFGPSSVLLRIPRSINLLSNSYLQFLLGPGTKMLFEFVKEMPKPETSFNLELSSLLGTMFFTWVILQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISVIYMLCFVIFGSLLGLKIFTINDYSIQFVFYFIYINLQIALAFMVASIFSNVKTATVTAYIGVFGTGLLAVFLFQFFVQNTSFPRGWIIVMEFYPGFALYRGLYELAQFSFQGSSSGSGGMKWQNLSESTNGMKEVLIIMFVEWIVMLFAAFYVDQVLLSGSRKSPLFYLKGFQKRPPFQKLDAQMQGSKVFSQTEKPDVIQEKEKVEQLLLEPSINHTIVCDDVKKVYPGRDGNPDKYAVRGLFLFVPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGRAFVQGLDIRTQMDEIYTTMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSLLTQAVEESLMSLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPRVIYMDEPSSGLDPASRKSLWNVVKRAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKELKERYGGTYVFTMTTSSDHEKDVENMVQKLTPNANKIYHLSGTQKFELPKEDVRIADVFQAVDAAKRNFTVSAWGLVDTTLEDVFIKVAREAQAFDTLS* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0827 954 Pfam ABC transporter 659 798 IPR003439 GO:0005524
Gso17g0827 954 SMART AAA_5 662 846 IPR003593 -
Gso17g0827 954 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 632 869 IPR003439 GO:0005524
Gso17g0827 954 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 954 IPR026082 GO:0016021|GO:0055085|GO:0140359
Gso17g0827 954 Gene3D - 624 899 IPR027417 -
Gso17g0827 954 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 870 IPR027417 -
Gso17g0827 954 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 6 954 - -
Gso17g0827 954 CDD ABC_subfamily_A 636 857 - -
Gso17g0827 954 ProSitePatterns ABC transporters family signature. 771 785 IPR017871 GO:0005524
Gso17g0827 954 Pfam ABC-2 family transporter protein 352 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0827 Gso-Chr17 7762079 7771212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0827 608 856 Calmodulin-binding Proteins AT2G36910 24.016 1.79e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0827 - - gmx:100806425 1875.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0235 5 2446972 2456899 Gso17g0827 17 7762079 7771212 GST