Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0826 ATGGGGAAGTCACCAGGAAAATGGATCAAAACTGTATTGTTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGGCAGAGAGGTAAAGCTTGTTAATCAAGAAGAAGGAGTTGTAGTTACCTCCAAGGTGCTAGAAACTGGTTTGGCTTTAGAACCAACCTCCGATACTATTGCCAGACATGAGGAAGACCTAGAGCTGGAAAATGAAGAAGCAGAAAATGTTATACCTGGGAATCAAGAAATAGACACAGTGGGATCAATTAATGAAGATGCTGCACTAGATCCAGAGAAAATAAGGCTGGAGGAAGCTGCTACCAAGGCACAAGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCATTTAGGGCCCTAAAAGGCATTATAAGGTTGCAAGCACTCATCCGTGGGCACTTGGTTAGGAGACAAGCTGTTGCAACATTATGCTCTATGTATGGTATTGTCAAGTTTCAAGCACTTGTTCGTGGAGGAATAGTTAGACATTCTGACGTTGGATCTGAAATCCAAGAGAAGTGCAACATATTGAACCCTCTGGATGGCAAGCTTGTCAAGCCAATTGCTATATCCATGAAAATTACCAAGCTGTCTGCAAATGCTTTCATTCGTAAGCTTCTCACTTCATCAACCAGAATAATGGTGCTGCAGCTGCAATATGTTCCTGGTGATCCAAATTCTGTCCTAAGTTGGTTGGAGCGCTGGTCAGCATCTCATTTTTGGAAACCAGTTCCCCAGCCTAAGAAAATTCGGGATACTAAGTCTCATAGAAAGCATGGCAATATTTCAGTTGGAGATACTCATATGAGCAAGTCAAAACGAACCAACAGGAAGCTTCCTACTGCAAGTTTTGACTCAGTCCCAGTGCAAGCACATCCTGAATTTGAAAAACCAAAACGGAACATGAGGAAAATTCCAAGCCAATCCTCAGATCCTCCTGTGCAGGAAAATCCACAAAGTGAGCTTGAAAAGATTAAACGTAACCTGAGGAAAGTTCATAACCCAGTTGTTGAGAATGCTGTTCCGTCAGAAGTTGAATCGGAGACGCCAAAGGATCATTTGGAAAAGGCAACAGTTACCTCATGCCTTGCTGTTTCAGAACAAGAGGTCATTAGTTCTAATGAGAAGATCAAGAAGGAAGCAACATTAATTGTTTCTAGTGTGCCAGATATAGAAACTACTCCAAGACTTTCAGTTAGTAAGGAGGTGTTAGACTCACCAAGCAGTTATCAAGTGACTGTGGAATCAAAACCATTGACTGAGATTACAACTAAAGATAAAAACATTCATGTTTCTGATGAAGTAAAAAACGAGCCCATAGATTTACCAGAGCCTATTTGTAAAGATGAAAATTCTCACTTAACAAATGGAGATTTGAGTCACAAGGAAGATCAAATAGGCAGTGAAAACCAGAAACCAAACGGAAAAGCCTCAATTGTAGCAAAGCAGGAACGTGCAGAGAATGGTATACAGAATAGTCCAGCACTACCAAGTTACATGGCAGCAACTGAATCTGCAAAGGCAAAGTTGAAGGCACAAGGATCCCCGAGATTTGGACAAGATGGAAGTGAAAAAAACAACCATACTCGGCGACATTCTCTGCCATCCTCAACTAACTGCAAAATTAGTTCGCATTCACCTAGGACACTGAGACAAGTTCAATCAGGAGGCAAAGGTGGCCACAGAAGTGACAGAACTGTATCATCTTCTAGAGATGGGAATGGAAAGGTAATTCAAGCAGAGTGGAGGCGGTAA 1767 0.4165 MGKSPGKWIKTVLFGKKSSKSNISKGREVKLVNQEEGVVVTSKVLETGLALEPTSDTIARHEEDLELENEEAENVIPGNQEIDTVGSINEDAALDPEKIRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCSMYGIVKFQALVRGGIVRHSDVGSEIQEKCNILNPLDGKLVKPIAISMKITKLSANAFIRKLLTSSTRIMVLQLQYVPGDPNSVLSWLERWSASHFWKPVPQPKKIRDTKSHRKHGNISVGDTHMSKSKRTNRKLPTASFDSVPVQAHPEFEKPKRNMRKIPSQSSDPPVQENPQSELEKIKRNLRKVHNPVVENAVPSEVESETPKDHLEKATVTSCLAVSEQEVISSNEKIKKEATLIVSSVPDIETTPRLSVSKEVLDSPSSYQVTVESKPLTEITTKDKNIHVSDEVKNEPIDLPEPICKDENSHLTNGDLSHKEDQIGSENQKPNGKASIVAKQERAENGIQNSPALPSYMAATESAKAKLKAQGSPRFGQDGSEKNNHTRRHSLPSSTNCKISSHSPRTLRQVQSGGKGGHRSDRTVSSSRDGNGKVIQAEWRR* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0826 588 SMART iq_5 100 122 IPR000048 GO:0005515
Gso17g0826 588 SMART iq_5 123 144 IPR000048 GO:0005515
Gso17g0826 588 Pfam Protein of unknown function (DUF4005) 487 567 IPR025064 -
Gso17g0826 588 ProSiteProfiles IQ motif profile. 101 129 IPR000048 GO:0005515
Gso17g0826 588 MobiDBLite consensus disorder prediction 250 323 - -
Gso17g0826 588 Pfam IQ calmodulin-binding motif 125 142 IPR000048 GO:0005515
Gso17g0826 588 Pfam IQ calmodulin-binding motif 103 122 IPR000048 GO:0005515
Gso17g0826 588 MobiDBLite consensus disorder prediction 489 503 - -
Gso17g0826 588 PANTHER IQ-DOMAIN 5-RELATED 1 576 - -
Gso17g0826 588 MobiDBLite consensus disorder prediction 458 473 - -
Gso17g0826 588 MobiDBLite consensus disorder prediction 536 557 - -
Gso17g0826 588 MobiDBLite consensus disorder prediction 433 452 - -
Gso17g0826 588 Gene3D - 99 149 - -
Gso17g0826 588 ProSiteProfiles IQ motif profile. 125 152 IPR000048 GO:0005515
Gso17g0826 588 PANTHER PROTEIN IQ-DOMAIN 31 1 576 - -
Gso17g0826 588 MobiDBLite consensus disorder prediction 433 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0826 Gso-Chr17 7750629 7757796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0826 1 588 IQD Protein Family AT1G74690 44.409 4.79e-129 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0826 - - gmx:100807118 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0236 5 2458250 2465128 Gso17g0826 17 7750629 7757796 GST
Gso1g0377 1 4775966 4781282 Gso17g0826 17 7750629 7757796 PCT