Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0815 ATGGACGACGGCGATCCTTCCCTGTCCGATAAAGAGGAGGGGGAGAACGATGAGGAAGACACTCCGTTGTTGCGAGTTCCACTCGTCGATGCTCCTATACTCTTGTTCGTTTGCTTCCACAAGGCTTTTCGCTCCGAACTCGATCACCTTCGTCGCTTGGCGGAAACGGCGTCGTCGTTGGAGGACGAGCCGCGCCGTTGCCGACAAATAGTTCTTCAGCTTCAACGTAGGTTTCAGTTCCTCAAACTAGCTCATAAGTATCATTGTGCTGCGGAAGACGAGGTTATCTTCCTTGCACTGGATACACATGTGAAAAATGTAATCTGTACATATTCCCTTGAACATAGAAGCACGAATGGCCTTTTTGGTTCTGTTTTTCATTTCTTGGATGAGCTGATGGTTCCTAAAGAGAATATTTCCAAGCTGTTTCAAGAACTTGTGTACTGCATTGGCATCTTGCAAACCTCCATCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCCCTGTTGATCCAGAAATTATCTAACAAAGAACAGGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTATCCTTCCTTTCTGCAAACAAACAATCAGAAGTTACCCAGTGTTTAAATGAAATTGCACCAATGGAAAAGGCAATGCAAGAGGTTTTGGTTTCTTGGCTTAGAAGCAGCAAACAAACCTGTACCGAGACCTGTTTTCAGAGTGGAGAATTTCAAGGTGTTGATGGATTCCTACATATAGAAAGATCACTAGAGCTGAGTTATTGTAATAGGAACTCCGAAGAAATTTCAAGTCCAATGAAAGTGAATGGCAAAGAAATAGAAGATGGAGCCAACCAGGTTAATGTCCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGATATTCTGGAAGAACTTCATCTGCTAAGAAAATCCAGCTGTTTTCAGAATTTAGACTCGATACTTATCCAACTAAAATTCTTTGCAGATGTCCTCATCTTCTACAGTGATGCTCAGAAGAAATTCTTTCATCCTGTACTGAATAAACATGCTTATGGTTGGTTGTCCAAGTCCATTGAACAATTTCTTGGTGAAAGTAACATTGAAGATATACAACAATTGCTATTCTATAACTCAGAAAGTGGAATACTTTTGAGCAAATTCATAGAGAAGCTTTGCCAAACACTTGAATCATTTGTATCAGGAGTCAACAAACAATTTGCTTTTCAAGAAAATGAGGTATTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGAGAGACTTCTAAGCTTGAGCCTATATATGATGCCTCTTGGGTTACTAAGATGTGTTATAACCTGGTTTTCAGTTCGCTTGTCTGAAAAAGAGTCTAGCTCCATTCTCTATTGCATAAAGAAAGGAAATAATTCTGTCTGTAAAGCTTTTTCATCACTGTTACATGAGTGGTTCCGCATTGGTTATTCAGGTAAAACCTCTATTGAAAAATTCAGACAAGAACTGCAACATATGTTTAAAAGAAGATGCTCTCTTTTACCCGAACAAATTAAGGAAGCTCATGAATTTTCTTTCTTAAATTCTGAGAAGCAGCCTCATAAAGTCTCTGGCCAGAATTGTTTGTCCTATTCCTCCTCCTCTGGATCCAATAATGTAAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCATATATTTTTTCCTTCCACAGTTGCGAAGTTACATCAGCATCCTACATTACATGCAGAAGAACGTTCTTCTATTTCTTTTCTTGATGATCCGAAACCAATTGACCTAATATTTTTCTTTCACAAAGCTATCAAGAAAGATTTGGAGTACCTAGTTCTTGGCTCAACTCAGTTAGAAAAAAATGATAAGTTGCTTATGGATTTCCATAAACGATTCCATCTCATATATTTTCTTCATCAAATCCATAGTGATGCAGAAGATGAGATAGTGTTTCCAGCCATGGAGGCAAGGGGTAAACTTAAAAACATTAGCCATGCTTATACCTTTGATCACAAACATGAAGTTGATCACTTCAATAAAATATCTCACATCCTTGATAAGATGTCTGGGTTACATCTTTCTGTTTCTACAATTGATCCAAATGTCAAGGAGAAGGGAATTCTAAGGTATCACCATTTATGCAGGAAGCTGCAAGAAATGTGCAAATCAATGCATAAGTCACTTTCTGATCACATAAACCGTGAGGAAATAGAAATTTGGCCTATAATTAGAAAATTCTTCTCAAACCATGAGCAAGGGAGGATCATTGGATGCATGCTTGGAAGAATAAGAGCAGAGATATTGCAAGATATGATACCTTGGCTAATGGCATCTTTAACACAGGAAGAACAACATGTTTTGATGTTCTTATGGTCCATGGCTACTAAAAATACAATGTTTGATGAATGGTTAGGTGAATGGTGGGATGGGTACAGTTTAACCAAGGTAACAGAGGGGTCAAATGTTGCCCCTCTCCAGCCTGTTGAGCCACTGGAGATTATATCCAAATATTTATCTGAAGAAATTCTGGATGAATTACAAGAAGAATCATCTGCCAACAAAAGCATAAATTTTTTGCAGAAGGATCATAATGGTGATAATGTTGTGCTGTCTAACTACAACTTTGATGATAAAGTTAAGGTTCATAATGCAGAACAAAATAATAATCAATGTTCGAAACTCACAAATCAATTTCATGATCATAACAAACATGCTTGCAATGAAGTAACAAATATCATAAATCCTGTAAACAATGAAGGTAAGTATTCTCAACTTTGTGACAAGTCTGGGCGTTATGACCGACTTTTGAAATTGAGTCAAGATGATTTGGAGACGGTGATAAGAAGGGTGTCTCGTGACTCTTGCTTGGATCCTCAGAAAAAGTCATACATAATACAGAACCTACTAATGAGTCGTTGGATTATTAGGCAGCAGATCTCTTCTACAGAAGCCAATATAAAAAATGATGAACTGGAATTTCCTGGGAAACATCCATCTTACAGGGACCCTCTCAAACTAATCTACGGTTGTAAACACTACAAGAGGAACTGTAAGCTTTTTGCTCCTTGTTGCAACCAACTTCATACCTGCATACATTGCCATAATGAGGAATCAGATCATTCAGTTGACAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTAGTGATTCAACCAATCAGTGCCACATGCTCAACAATTTCATGTAATTTATCGATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCATTGTCCTTACTGTAACCTGTGCCGAGTTGGAAAGGGTTTGGGTGTAGACTACTTTCACTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTTATGACACATACATGCAGGGAGAAACATTTAGAGGACAACTGTCCAATTTGTCATGAATATATCTTCACATCCTGCTCTCCGGTAAAAGCCCTCCCATGTGGTCATGTAATGCACTCAACATGTTTTCAGGAATATACCTGCTTTAATTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGAATGACTTGCAGGTATATTTTAGGATGTTAGATGCGTTGTTGGCTGAAGAGAGAATTTCTGATGAGATTTCTAGTCAAACTCAGTTGCAGGTTTTATTATGTAATGATTGTGAAAAGAAAGGAGAGACCCCCTTCCACTGGCTCTACCACAAATGCCCTAGTTGTGGTTCCTACAACACTAGAGTTCTATGA 3807 0.3827 MDDGDPSLSDKEEGENDEEDTPLLRVPLVDAPILLFVCFHKAFRSELDHLRRLAETASSLEDEPRRCRQIVLQLQRRFQFLKLAHKYHCAAEDEVIFLALDTHVKNVICTYSLEHRSTNGLFGSVFHFLDELMVPKENISKLFQELVYCIGILQTSIYQHMLKEEEQVFPLLIQKLSNKEQASLVWQFICSVPIMLLEEVLPWMVSFLSANKQSEVTQCLNEIAPMEKAMQEVLVSWLRSSKQTCTETCFQSGEFQGVDGFLHIERSLELSYCNRNSEEISSPMKVNGKEIEDGANQVNVLHLWHNAIKKDLKDILEELHLLRKSSCFQNLDSILIQLKFFADVLIFYSDAQKKFFHPVLNKHAYGWLSKSIEQFLGESNIEDIQQLLFYNSESGILLSKFIEKLCQTLESFVSGVNKQFAFQENEVFPIFRKNCRNGMQERLLSLSLYMMPLGLLRCVITWFSVRLSEKESSSILYCIKKGNNSVCKAFSSLLHEWFRIGYSGKTSIEKFRQELQHMFKRRCSLLPEQIKEAHEFSFLNSEKQPHKVSGQNCLSYSSSSGSNNVNKYETPYSTGINLHIFFPSTVAKLHQHPTLHAEERSSISFLDDPKPIDLIFFFHKAIKKDLEYLVLGSTQLEKNDKLLMDFHKRFHLIYFLHQIHSDAEDEIVFPAMEARGKLKNISHAYTFDHKHEVDHFNKISHILDKMSGLHLSVSTIDPNVKEKGILRYHHLCRKLQEMCKSMHKSLSDHINREEIEIWPIIRKFFSNHEQGRIIGCMLGRIRAEILQDMIPWLMASLTQEEQHVLMFLWSMATKNTMFDEWLGEWWDGYSLTKVTEGSNVAPLQPVEPLEIISKYLSEEILDELQEESSANKSINFLQKDHNGDNVVLSNYNFDDKVKVHNAEQNNNQCSKLTNQFHDHNKHACNEVTNIINPVNNEGKYSQLCDKSGRYDRLLKLSQDDLETVIRRVSRDSCLDPQKKSYIIQNLLMSRWIIRQQISSTEANIKNDELEFPGKHPSYRDPLKLIYGCKHYKRNCKLFAPCCNQLHTCIHCHNEESDHSVDRKSITKMMCMKCLVIQPISATCSTISCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMTHTCREKHLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQNDLQVYFRMLDALLAEERISDEISSQTQLQVLLCNDCEKKGETPFHWLYHKCPSCGSYNTRVL* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0815 1268 Pfam Hemerythrin HHE cation binding domain 40 172 IPR012312 -
Gso17g0815 1268 CDD Hr-like 39 170 - -
Gso17g0815 1268 SMART ring_2 1156 1197 IPR001841 -
Gso17g0815 1268 SUPERFAMILY CHY zinc finger-like 1019 1084 IPR037274 GO:0008270
Gso17g0815 1268 Pfam Zinc-ribbon 1207 1266 IPR039512 -
Gso17g0815 1268 Gene3D - 1234 1268 - -
Gso17g0815 1268 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 24 1268 - -
Gso17g0815 1268 SUPERFAMILY Zinc hairpin stack 1093 1148 IPR037275 -
Gso17g0815 1268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1149 1200 IPR013083 -
Gso17g0815 1268 SUPERFAMILY RING/U-box 1153 1202 - -
Gso17g0815 1268 Pfam Ring finger domain 1154 1197 IPR001841 -
Gso17g0815 1268 CDD RING-H2_Pirh2 1155 1198 - -
Gso17g0815 1268 ProSiteProfiles Zinc finger CHY-type profile. 1021 1090 IPR008913 GO:0008270
Gso17g0815 1268 ProSiteProfiles Zinc finger RING-type profile. 1156 1198 IPR001841 -
Gso17g0815 1268 MobiDBLite consensus disorder prediction 1 21 - -
Gso17g0815 1268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 24 1268 - -
Gso17g0815 1268 CDD Hr-like 613 759 - -
Gso17g0815 1268 MobiDBLite consensus disorder prediction 1 17 - -
Gso17g0815 1268 Pfam CHY zinc finger 1028 1102 IPR008913 GO:0008270
Gso17g0815 1268 ProSiteProfiles Zinc finger CTCHY-type profile. 1092 1155 IPR017921 -
Gso17g0815 1268 Gene3D nmb1532 protein domain like 293 445 - -
Gso17g0815 1268 Gene3D nmb1532 protein domain like 607 778 - -
Gso17g0815 1268 Gene3D nmb1532 protein domain like 31 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0815 Gso-Chr17 7652838 7663454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0815 31 854 C2H2 Transcription Factor Family AT3G18290 32.131 4.15e-128 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0815 K16276 - gmx:100802706 2565.8