Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0813 ATGGCGGCTAGTGGAAGTTCCTTTTCCAACATCACTAGCTTCCTTCGCAACCAACAACCCTCTTCCCAACCTCTCGATTCTTCTCTCTTCCTCTCTGCTCCTTCAATTTTTGTTTCAGGTTCGAGATCCATGGTGAGTTTTGAAGCAGAAGGAGGGAAGGGGTGTAACGGCTCCTTCTTCCGCGCGTTTGACATGGACGACAATGGGGACGAGTGCATGGATGAGTACTTTCATAAACCCGAGAAGAAGCGTCGTCTCTCCATGAACCAGGTTCAGTTTCTGGAGAAGAGTTTCGAGGAGGAGAACAAGCTTGAACCGGAGAGAAAGACCAAGCTTGCCAAAGACCTTGGTTTGCGGCCACGGCAAGTTGCTATTTGGTTCCAGAACCGTCGAGCTCGCTGGAAGACCAAGACGCTGGAGAAGGATTACGAGGCTCTGCATGCAAGTTTTGAGAATCTTAAGTCCAACTATGACAGCCTCCTCAAGGAGAAAGACAACTTAAAAGCTGAGGTGGCGAGCCTCAATGAGAAGGTGCTTGCAAGAGGGAAACAAGAGGGGCACATGAAGCAGCAGGCTGAAAGTGAAGAAGAAACAAAAAGATTATTGCATTTGCAGGAACAGGAACCACCCCAGAGGCTTTTACTGGAATCAGTTTCGGAGGGAGAAGGATCCAAAGTCTCTTCTGTTGTCGGGGGTTGTAAACAGGAAGATATCAGTTCAGCCAGGAGTGATATTTTGGATTCAGATAGTCCACATTACACCGATGGAGTTAACTCCGCACTGCTAGAGCATGGTGATTCTTCTTATGTGTTTGAGCATGATCAATCGGATATGTCACAAGATGAAGAAGATAACCTCAGCAAAAGTCTCTACCCTTCGTACCTCTTTCCCAAACTTGAAGAAGATGTGGATTACTCCGACCCGCCTGAAAGTTCTTGTAATTTTGGATTTTCTGAGGAAGATCACGCCCTTTGGACCTGGGCATACTAA 990 0.4717 MAASGSSFSNITSFLRNQQPSSQPLDSSLFLSAPSIFVSGSRSMVSFEAEGGKGCNGSFFRAFDMDDNGDECMDEYFHKPEKKRRLSMNQVQFLEKSFEEENKLEPERKTKLAKDLGLRPRQVAIWFQNRRARWKTKTLEKDYEALHASFENLKSNYDSLLKEKDNLKAEVASLNEKVLARGKQEGHMKQQAESEEETKRLLHLQEQEPPQRLLLESVSEGEGSKVSSVVGGCKQEDISSARSDILDSDSPHYTDGVNSALLEHGDSSYVFEHDQSDMSQDEEDNLSKSLYPSYLFPKLEEDVDYSDPPESSCNFGFSEEDHALWTWAY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0813 329 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Gso17g0813 329 Gene3D - 76 154 - -
Gso17g0813 329 MobiDBLite consensus disorder prediction 180 199 - -
Gso17g0813 329 Pfam Homeobox associated leucine zipper 137 178 IPR003106 GO:0006355|GO:0043565
Gso17g0813 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 19 326 IPR045224 GO:0003700
Gso17g0813 329 CDD homeodomain 82 137 IPR001356 GO:0003677
Gso17g0813 329 SMART HOX_1 80 141 IPR001356 GO:0003677
Gso17g0813 329 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Gso17g0813 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 19 326 - -
Gso17g0813 329 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Gso17g0813 329 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
Gso17g0813 329 SUPERFAMILY Homeodomain-like 66 137 IPR009057 -
Gso17g0813 329 Coils Coil 143 177 - -
Gso17g0813 329 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0813 Gso-Chr17 7631999 7634001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0813 20 274 Homeobox Transcription Factor Family AT3G01470 39.924 2.46e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso17g0813 Homeodomain 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0813 - - gmx:100804450 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0250 5 2578295 2580556 Gso17g0813 17 7631999 7634001 GST