Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0798 ATGGAACCTCCTCTCATCAACGACTCCACATTCTCTTCCGCTAACCCTTCCTTGTCCGAGATTTGGCCCTCTCATTTTCCCACAGACCACACTCCCAGTAACAAGAGACACCTCTCCCCCTCGACTGATTGTGGCAGCAATAAACATATCAAATCATCAGGATCAGGATCCCAGGATCAAAACGGTGCCTTGAAGGCGGGTGAAGTGGACGCGACTTCAGTAGCCGGTAACAAGTTACCCGAACAAACGGCGAAACCTAGTTCTTCCGAGCAGCCACCTAAGCAAGACTATATACACGTGCGAGCTAGAAGAGGCCAAGCCACCGATAGCCACAGTCTCGCTGAGAGAGCTAGGAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAAGATATAGTTCCCGGCTGCAACAAGGTAATTGGTAAAGCACTTGTGCTGGATGAGATAATTAATTATATCCAGTCACTGCAGCATCAGGTTGAGTTCCTTTCTATGAAGCTTGAGGCAGTTAATTCGAGATTGAGCATGAGCCCTACTATTGAATGTTTTCCTTCAAAAGAAGTTGGCACTCAGCCATTTGACCTTGCCGGAATAATATTTGGATCACAACCGGCCAGGGGATATGCTCAAGGATCACAGCCGGGATGGCTGCATATGCAGATAGCTGGTGGTTTTGAGAAAGCAACATAA 690 0.4725 MEPPLINDSTFSSANPSLSEIWPSHFPTDHTPSNKRHLSPSTDCGSNKHIKSSGSGSQDQNGALKAGEVDATSVAGNKLPEQTAKPSSSEQPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDIVPGCNKVIGKALVLDEIINYIQSLQHQVEFLSMKLEAVNSRLSMSPTIECFPSKEVGTQPFDLAGIIFGSQPARGYAQGSQPGWLHMQIAGGFEKAT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0798 229 MobiDBLite consensus disorder prediction 1 72 - -
Gso17g0798 229 SMART finulus 112 162 IPR011598 GO:0046983
Gso17g0798 229 Gene3D - 103 179 IPR036638 GO:0046983
Gso17g0798 229 MobiDBLite consensus disorder prediction 1 62 - -
Gso17g0798 229 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 229 IPR024097 GO:0006355
Gso17g0798 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 156 IPR011598 GO:0046983
Gso17g0798 229 PANTHER BNAC05G07950D PROTEIN 44 229 - -
Gso17g0798 229 Pfam Helix-loop-helix DNA-binding domain 110 157 IPR011598 GO:0046983
Gso17g0798 229 CDD bHLH_AtBPE_like 96 175 - -
Gso17g0798 229 Coils Coil 153 173 - -
Gso17g0798 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 175 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0798 Gso-Chr17 7456110 7459560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0798 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 46.181 2.92e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g0798 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0798 - - gmx:100799646 463.381