Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0795 ATGTCTCGCGCCTCCTCCGCCGCAGATTCCGCCGCCTCCGGTGAGATCATACTGTTCGGAGTCAGAGTCGTCGTCGATTCCATGAGGAAGAGCGTCAGCATGAGCAACCTCTCACAGTACGAGCATCCTCAAGACGGCAGCAACAACAAAGACGCTCTCGCCGCCGGTTACGCCTCCGCCGACGACGCCGCTCCTCAGAACTCCGGCCGCCTCCGGGAGCGCGAGCGAAAGCGAGGAGTTCCGTGGACGGAGGAAGAGCACAAGCTGTTTTTGGTTGGATTGCAGAAGGTAGGGAAAGGTGATTGGAGAGGAATCTCCAAAAACTACGTCAAAACGCGAACGCCAACGCAGGTTGCGAGCCATGCTCAGAAGTACTTTCTCCGACGAAGCAACCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGACATCACCACCGACACGGTCTCTGCAATTCCAATGGAGGGAGAACAGGTCCAGAATCAAGACACGCTGTCTCATTCACAACAACAATCACCCTTGTTTCCTGCTGAAACTAGCAAAATCAATGGGTTTCCAATGATGCCAGTGTATCAGTTTGGGTTTGGTTCTTCTGGAGTGATTTCAGTCCAAGGTGGCAATGGAAACCCAATGGAAGAACTCACTCTGGGACAAGGAAACGTGGAAAAACATAATGTGCCAAACAAGGTCTCTACAGTGTCTGATATCATCACCCCGAGTTCTTCTAGTTCTGCCGTTGACCCACCGACACTGTCCCTGGGGCTATCCTTTTCATCTGACCAAAGACAGACATCATCAAGACATTCAGCTTTACATGCCATACAATGTTTCAGCAATGGAGAAAGCATCATTAGTGTTGCTTGA 864 0.5162 MSRASSAADSAASGEIILFGVRVVVDSMRKSVSMSNLSQYEHPQDGSNNKDALAAGYASADDAAPQNSGRLRERERKRGVPWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEGEQVQNQDTLSHSQQQSPLFPAETSKINGFPMMPVYQFGFGSSGVISVQGGNGNPMEELTLGQGNVEKHNVPNKVSTVSDIITPSSSSSAVDPPTLSLGLSFSSDQRQTSSRHSALHAIQCFSNGESIISVA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0795 287 PANTHER KIN2 13 287 - -
Gso17g0795 287 SMART sant 78 128 IPR001005 -
Gso17g0795 287 ProSiteProfiles Myb-like domain profile. 74 126 IPR001005 -
Gso17g0795 287 SUPERFAMILY Homeodomain-like 76 131 IPR009057 -
Gso17g0795 287 MobiDBLite consensus disorder prediction 59 79 - -
Gso17g0795 287 Pfam Myb-like DNA-binding domain 81 126 IPR001005 -
Gso17g0795 287 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 287 - -
Gso17g0795 287 Gene3D - 80 132 - -
Gso17g0795 287 CDD SANT 81 126 IPR001005 -
Gso17g0795 287 ProSiteProfiles SANT domain profile. 77 130 IPR017884 -
Gso17g0795 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 128 IPR006447 GO:0003677
Gso17g0795 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 130 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0795 Gso-Chr17 7412053 7414112 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso17g0795 Myb_DNA-binding 3.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0795 - - gmx:780536 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0269 5 2799613 2801614 Gso17g0795 17 7412053 7414112 GST
Gso17g0795 17 7412053 7414112 Gso4g1484 4 43525816 43528615 PCT
Gso17g0795 17 7412053 7414112 Gso6g1579 6 16399217 16402066 PCT
Gso4g1484 4 43525816 43528615 Gso17g0795 17 7412053 7414112 PCT
Gso6g1579 6 16399217 16402066 Gso17g0795 17 7412053 7414112 PCT