Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0787 ATGGCTTCTTCAGATCCCATCTCTTCTCGCCACTACACTTACAACAGAAAACAAAAATCTCTAGGCCTTCTCTGCACTAATTTCTTGAGCTTGTACAACCGAGACACCGTTCACTTGATTGGCCTAGACGATGCTGCCACCCGATTAGGTGTTGAGAGACGGCGGATCTATGACATTGTGAATGTCCTGGAGAGTATCGGGGTACTCTCAAGGAAAGCAAAAAATCAATACACATGGAGAGGGTTTGCCGCAATCCCTCTCACTCTACAGGATCTCAAGGAAGAGGGGTTGAAGGAGAATTCTAATTCCCTACGTGGGCCTGGAAACCATGATAAAGTTTCCGACGACGAAGATGACGAGGAAACACAGTCCAATCCCGCCGCTACTGGAAGTCAAAGTGACAAGTTGAACCCTAATTCTACTCTTCCTAAACCTCTGAAAAATGAAAATCGAAGAGAAAAATCTCTGGCTCTGCTTACCCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATGTGGAATTGATCTCCCTTGACGAGGCTGCAAAATTGCTACTTGGGGATGCCCATAATACGTCTGTAATGAGAACTAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCCTCCATGAACCTTATTGAGAAGACCCATACAATGGATACACGAAAACCAGCATTCAGGTGGCTCGGTTCTGAAGGGAAGACATGGGATGAGACACTTCACAAATCAAACCTAAACGACTCTAGGAAAAGGGCGTTTGGAAGTGATATCACTAACATCAGTTTTGAGAGGAATAAAGTGGAATTGTTCACGAGTGGGGACTTGAATCCGAATCCTAAGAAGCCAAGAATGGAAAATGGTAGTGGGCTGGGTGAGGCAGACGAAAACAATTTAAAACAAGGCATAAAACAAGCTTCAAAGAGCTATGAATTTGGTCCTTTCGCTCCAGCTTGCGTGCCCAAAGTTGGAGCCTCTCAGAATAATAATATGAAGCAGGTGCATGACTGGGGCAGTCTTGCAACTGCACATAGCCCTCAGTATCAAAATGAAGCCTTGAGAGAACTCTTCTCCCATTACATGGAAGCATGGAAATTGTGGTACTCAGAAATTGCTAGGAAGAGGCCATTACAAATTTTGTAA 1143 0.4409 MASSDPISSRHYTYNRKQKSLGLLCTNFLSLYNRDTVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWRGFAAIPLTLQDLKEEGLKENSNSLRGPGNHDKVSDDEDDEETQSNPAATGSQSDKLNPNSTLPKPLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSVMRTKVRRLYDIANVLSSMNLIEKTHTMDTRKPAFRWLGSEGKTWDETLHKSNLNDSRKRAFGSDITNISFERNKVELFTSGDLNPNPKKPRMENGSGLGEADENNLKQGIKQASKSYEFGPFAPACVPKVGASQNNNMKQVHDWGSLATAHSPQYQNEALRELFSHYMEAWKLWYSEIARKRPLQIL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0787 380 MobiDBLite consensus disorder prediction 272 296 - -
Gso17g0787 380 PANTHER TRANSCRIPTION FACTOR E2F 8 368 IPR015633 GO:0000978|GO:0006357
Gso17g0787 380 SUPERFAMILY "Winged helix" DNA-binding domain 153 232 IPR036390 -
Gso17g0787 380 SMART E2F_TDP_2 151 231 IPR003316 GO:0005667|GO:0006355
Gso17g0787 380 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Gso17g0787 380 MobiDBLite consensus disorder prediction 99 149 - -
Gso17g0787 380 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 368 - -
Gso17g0787 380 MobiDBLite consensus disorder prediction 124 145 - -
Gso17g0787 380 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Gso17g0787 380 Pfam E2F/DP family winged-helix DNA-binding domain 153 231 IPR003316 GO:0005667|GO:0006355
Gso17g0787 380 Gene3D - 145 233 IPR036388 -
Gso17g0787 380 Gene3D - 11 83 IPR036388 -
Gso17g0787 380 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0787 Gso-Chr17 7324092 7328411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0787 11 377 E2F-DP Transcription Factor Family AT3G48160 53.867 1.10e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gso17g0787 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0787 K09391 - gmx:100795252 766.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0277 5 2900602 2904132 Gso17g0787 17 7324092 7328411 GST
Gso17g0787 17 7324092 7328411 Gso4g1496 4 43726335 43732268 PCT
Gso17g0787 17 7324092 7328411 Gso6g1571 6 16271180 16292946 PCT
Gso4g1496 4 43726335 43732268 Gso17g0787 17 7324092 7328411 PCT
Gso6g1571 6 16271180 16292946 Gso17g0787 17 7324092 7328411 PCT