Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0780 ATGGCATCATTTGCAGGCACTACCCAGAAGTGCACAGCATGTGAAAAGAAAGTGTATTGGGTGGAACAACTCACTGCTGACAACAAGGTGTACCACAAATCTTGCTTCAGATGTCACCACTGTAAGGGTACCCTCAAGCTGAGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACCGGCAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAAGTGCTAGGGTTGAAAGATCTGCTGATCAGGTCCAAAGCAACAACAAGGTTTCAAGATTATTCTCTGGAACACAGGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTGGCTGTTGATGGCAAATCCTACCACAAGTCTTGTTTCAGGTGCACTCATGGAGGTTGTGTAATAAGCCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGCAACTTCAGTCAATTAGACAAGCATGACAGTGTCCAAGTCGTCATCACTGAGAACACAACACAACATCCGGATCCGAGTAATGGCAATACCGATACAACTCCAGCTGAGGAATCTAGTTAA 630 0.4333 MASFAGTTQKCTACEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRSARVERSADQVQSNNKVSRLFSGTQEKCVGCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKHDSVQVVITENTTQHPDPSNGNTDTTPAEESS* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0780 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Gso17g0780 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Gso17g0780 209 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Gso17g0780 209 MobiDBLite consensus disorder prediction 187 209 - -
Gso17g0780 209 SMART lim_4 10 62 IPR001781 -
Gso17g0780 209 SMART lim_4 109 161 IPR001781 -
Gso17g0780 209 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 209 - -
Gso17g0780 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Gso17g0780 209 Gene3D Cysteine Rich Protein 5 75 - -
Gso17g0780 209 Gene3D Cysteine Rich Protein 104 174 - -
Gso17g0780 209 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Gso17g0780 209 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Gso17g0780 209 PANTHER OS06G0237300 PROTEIN 1 209 IPR045268 GO:0051015
Gso17g0780 209 Pfam LIM domain 110 165 IPR001781 -
Gso17g0780 209 Pfam LIM domain 11 65 IPR001781 -
Gso17g0780 209 CDD LIM1_SF3 7 68 - -
Gso17g0780 209 CDD LIM2_SF3 110 170 - -
Gso17g0780 209 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0780 Gso-Chr17 7238077 7242394 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gso17g0780 LIM 2.7e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0780 K09377 - gmx:100792627 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0287 5 3000763 3004638 Gso17g0780 17 7238077 7242394 GST
Gso17g0780 17 7238077 7242394 Gso4g1507 4 43915345 43919003 PCT
Gso17g0780 17 7238077 7242394 Gso6g1560 6 16111048 16114611 PCT
Gso4g1507 4 43915345 43919003 Gso17g0780 17 7238077 7242394 PCT
Gso6g1560 6 16111048 16114611 Gso17g0780 17 7238077 7242394 PCT