Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0771 ATGCGCAGCATTAATGGAAACTTGAAGTACTCATCATATTATCCTCAATCTCCCAACGACGTTAACATGAGCAGCAGCAACAATAAAGAAGCAACAACGGCATCATCTCTCAGCAGAATCAGTCCACTCATTCTACTAGTCATAATAGTTCTAGCAGTTATCTTCTTCGTCTACGGGCTCGTCCATTTGATTCTATGGTTTTTCATGAAAAGACCATTATCACCTTCATCTCTCTACAACTCCAACAGGTTCCACGAATACTCCACGCGCTCCCGTGTTCTTCTCCAAAGGCAGCTTCAGCAACTCTTCCGCTTGCACGATTCGGGTCTCGACCAAGCCGTCATAGACGCTTTACCCGTTTTCTGTTACCAGGACTTGTTGGGGTCGAAGGAACCGTTCGATTGTGCCGTGTGTTTGTGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACGCACGCCTTCCACATGAACTGTCTTGACACGTGGCTTCTCTCCAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTTTCCGAGTACATGGAGAATCAGAATCCAATGTTTAATGTTGGCAATTCCAGTTCTTTGGTTTTGCCAAATAGATTCAGGGTTGAAGAAGAGAATAATGGGTGTTCAGATAGTCAAAGGGTGTTTTCTGTGAGGCTTGGAAAATTCAGAAATGGAGAGGTGGGAGGGGACGGTGGTTGTAGTTTGAGTGAGAGGAGATGCTACTCTATGGGTTCGTATCGGTATGTGGTTCGTGATTTGAATTTGCAAGTCGTGTTATCTCATTCTCAATCTCAAGATGATGATGATGATGTTTTGGAAAATGGGAATGTGGAGGGGAAGAGGATAGGGGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAAGACCAGATTTCATGGTTCTAATGCACCTTTCCCTTGA 960 0.4552 MRSINGNLKYSSYYPQSPNDVNMSSSNNKEATTASSLSRISPLILLVIIVLAVIFFVYGLVHLILWFFMKRPLSPSSLYNSNRFHEYSTRSRVLLQRQLQQLFRLHDSGLDQAVIDALPVFCYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSEYMENQNPMFNVGNSSSLVLPNRFRVEEENNGCSDSQRVFSVRLGKFRNGEVGGDGGCSLSERRCYSMGSYRYVVRDLNLQVVLSHSQSQDDDDDVLENGNVEGKRIGDSTKGESFSVSKIWLWSKKTRFHGSNAPFP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0771 319 SUPERFAMILY RING/U-box 114 189 - -
Gso17g0771 319 MobiDBLite consensus disorder prediction 270 290 - -
Gso17g0771 319 Pfam Ring finger domain 134 177 IPR001841 -
Gso17g0771 319 CDD RING-H2_PA-TM-RING 134 177 - -
Gso17g0771 319 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 319 - -
Gso17g0771 319 SMART ring_2 135 176 IPR001841 -
Gso17g0771 319 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Gso17g0771 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 319 - -
Gso17g0771 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0771 Gso-Chr17 7146773 7148741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0771 29 316 C3H Transcription Factor Family AT2G18650 40.173 1.10e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0771 - - gmx:100789990 595.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0298 5 3105724 3107806 Gso17g0771 17 7146773 7148741 GST