Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0762 ATGAAAAACACAAACACTAATACTAGTGGTTCACCAAAACTTGATCGCAAAACTATTGAAAGGAACCGCAGGATTCACATGAAATCTCTCTGCTTCAAGCTTGTTTCCACTATTCCTTCCAATTACCTCAAAACCTCCAAGGACATGCTTTCCCAGCAGGATCAGCTTCATCTAGCAGCCACGTACATAAAGCATCTGAGAGAAAGAATAGAGAAATTGAAGGGGGAGAAGGAGAAAGCCATGAACATGATGATGATGTCAAACCAAAGCAATAATAGGATTTTCAATACTGGCTCTGAGTTGCCTCTACTTGAAATAAAGGACTTGGGTTCGGGCATTGAAGTGATGTTGATAAGTGGGTTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGCTGAAGTTGTCGCTGCCAACTTCTCCACCGTTGCTGATAAGATCTTTTACACGTTTCATGCTCAGGTTAAAATATCAAGAGTTGGTGTTGAGCCAGCGAGGGTATACCAAAGGCTTCAGGAGTTGATTGCACCACTTGAAAGCTGGGAATAA 567 0.4162 MKNTNTNTSGSPKLDRKTIERNRRIHMKSLCFKLVSTIPSNYLKTSKDMLSQQDQLHLAATYIKHLRERIEKLKGEKEKAMNMMMMSNQSNNRIFNTGSELPLLEIKDLGSGIEVMLISGLNKNFMLYEVISVLEEEGAEVVAANFSTVADKIFYTFHAQVKISRVGVEPARVYQRLQELIAPLESWE* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0762 188 Coils Coil 63 83 - -
Gso17g0762 188 MobiDBLite consensus disorder prediction 1 20 - -
Gso17g0762 188 Coils Coil 184 188 - -
Gso17g0762 188 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Gso17g0762 188 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 78 IPR036638 GO:0046983
Gso17g0762 188 PANTHER TRANSCRIPTION FACTOR BHLH162 7 181 - -
Gso17g0762 188 Gene3D - 2 94 IPR036638 GO:0046983
Gso17g0762 188 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Gso17g0762 188 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 181 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0762 Gso-Chr17 7066640 7067915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0762 1 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 34.737 7.91e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g0762 HLH 9.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0762 - - gmx:100811485 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0307 5 3195854 3197085 Gso17g0762 17 7066640 7067915 GST
Gso17g0762 17 7066640 7067915 Gso6g1541 6 15861636 15863672 PCT
Gso6g1541 6 15861636 15863672 Gso17g0762 17 7066640 7067915 PCT