Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0760 ATGGCCATCAGAGGCGTCGATTTCAAGTGGTACGATGGCTTTTTCTTGTTCATGCTCGCCACCAGTGTAGTTATTGTGGCAATCAATTGGAAGCGGTATCATTCTTGCACGTATCCGCTGCATATATGGATTGTGGTCGACTACACCACTGTGTTTGTTTTCCGGGTATTGATGTTTGTTGATAACGGGCTTTCTGCAGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCCAAGAACTGTTTGCCTGAAGTGGGTAAAAAATGGGGCTTTCTCATCTGGTTACTTTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATGTCTCTGGGGAAGTGGTTGACTCGAAGACAAGCACATTTATTGCGTGCCCAACAGGGTATCCCTGTATCTGAATACGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCCGCAGGCCAAGAAACAAGGGGCATGGGCCAAGATGCTGCTGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCTGGAACTACCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGTGGCCTGCCCTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTCAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTTTTCCCAAACCTTGATCTTAGTGCACTGTCCAGTCTCCGTGCTGAGCCTGAACAATTTTCTGCCAGTGTTGTGACAACAGCCAGATATGTGAGAGGCCAACCATCTAGTCTAAGTTACCGGCTAAGATTGCAGGGTCTTCTGTGTCCAGTCCGTGCTGAAATTGCAGGACCAGTTGGTGACATAGATAATGCGTTGAAAAATGCTCAGAATGGCGTTGTATCAATTGTGACTCAAAATGCATCATCATCTGGAGACCAAGCCTCTTCTGTCGAATGCATGCCTGTTACTGTCTGTCATTCCTCTGCACAAAGTTAG 1152 0.4644 MAIRGVDFKWYDGFFLFMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRVLMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEVGKKWGFLIWLLFSYCGLFCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAAAYHPGLYLTPAQREAVEALILELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSSLRAEPEQFSASVVTTARYVRGQPSSLSYRLRLQGLLCPVRAEIAGPVGDIDNALKNAQNGVVSIVTQNASSSGDQASSVECMPVTVCHSSAQS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0760 383 Pfam Ring finger domain 234 276 IPR001841 -
Gso17g0760 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Gso17g0760 383 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Gso17g0760 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Gso17g0760 383 CDD RING-H2_RNF111_like 234 278 - -
Gso17g0760 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Gso17g0760 383 SMART ring_2 235 275 IPR001841 -
Gso17g0760 383 SUPERFAMILY RING/U-box 228 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0760 Gso-Chr17 7042495 7048998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0760 58 362 C3H Transcription Factor Family AT3G47990 71.753 3.84e-155 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0760 K16284 - gmx:100785373 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0309 5 3220253 3226327 Gso17g0760 17 7042495 7048998 GST
Gso17g0760 17 7042495 7048998 Gso4g1532 4 44348601 44353339 PCT
Gso17g0760 17 7042495 7048998 Gso6g1539 6 15832528 15838085 PCT
Gso4g1532 4 44348601 44353339 Gso17g0760 17 7042495 7048998 PCT
Gso6g1539 6 15832528 15838085 Gso17g0760 17 7042495 7048998 PCT