Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0747 ATGTCACCCTCATCAGTTTCTGTTACTCCTCTTATGGACAATATTGAAACAAACCTCACAGAAAACTATGCCTCAGAGTCAAAGCCAATGCATTTGCAAGAAAACTACTTGAAACCAAGCATGGAAGATCAGCTTCCTTTTGGAACTCCTTCCACGCAGGGTTTCTTGCAAGATTCTCATCACATTGATCATCTTCAGTTTCACGTGAATGGCTCCTCATCATCCAATCCAATTTTTGGGGTACAAACTCCAAATTTTGATCCCTTTGATCACAATTGCAAGCTTTTTGCTGAGAGTAATGGTAGTGGACATGCTCATCTTATGGACAATTTCCAATATGTAGGTTACAGTTTGAACCTTCCTCGGACGAATCAACTGGATTTGATGGTTGCAAACCAAAGTTATGTGCCCTTTAATGCTCTTGAAACCAAGCCTTTGAATTTTGTTGTACCAGATGAAGTCTCATGCATTTCCCCACCAAATTATTATAAGAGAGTTGGTTTGAATAAAAACCTCAGGGAATCTCCAAGCACTAGGATAACATTCAAGGCTCGGAAGAAGTCCAACATAGTGAAGGGGCAATGGACATCAGATGAAGACAGATTGTTGATTCAACTGGTCGAACAATATGGACTGAGGAAATGGTCACATATAGCTCAGGCGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAACGATGGCATAACCATTTGAGGCCAGACATTAAGAAGGACATATGGACCGAAGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATTGGAAACAAGTGGGCTGAAATTGCAAAAAAATTGCCTGGAAGGACTGAGAACTCAATCAAAAACCATTGGAACGCAACAAAGAGAAGACAATATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGCTCTCTTCTTCAGGAATACATCAAGAGCTTGAACTTGGACAAAAATCCACCAATAGACTATCGAAAAAAATCTGATAAAAATGCCAATGCCAAGACAAACAACAACGGCAAAGCAGCAGCTCAGCCCCAGTGTGCTGATCAATTTTGTCCCAATGGCCAGATTGTGCCAAGGTATGATTTTAACGAGGTCCCAGATTTTTCTTTGGATGATAACTTGTTTGAAGAGGGGTGCAGCATTGATTCTCTGCTAGATGATATGCAAAGTGCTTCTACTGTTGATCATGAGAAAGACTTTGATGGAAAAATAATGCAATGTGCTCCTACTATGGATGGAAAACAATCTCATCATCAGGTTGGCATACAGTGTGTTCATGTTGTTGATGAACATCATCATGATCATGAGACTGAGATGGTGGCACACACGATGGGGAATGAAGTTAAGAAGGAATTTGATTTGGTGGAAATGATGTCCCACATGAATGGAAGCCATTATAGTACACACTCACCACGTTGA 1428 0.4076 MSPSSVSVTPLMDNIETNLTENYASESKPMHLQENYLKPSMEDQLPFGTPSTQGFLQDSHHIDHLQFHVNGSSSSNPIFGVQTPNFDPFDHNCKLFAESNGSGHAHLMDNFQYVGYSLNLPRTNQLDLMVANQSYVPFNALETKPLNFVVPDEVSCISPPNYYKRVGLNKNLRESPSTRITFKARKKSNIVKGQWTSDEDRLLIQLVEQYGLRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIQAHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLNLDKNPPIDYRKKSDKNANAKTNNNGKAAAQPQCADQFCPNGQIVPRYDFNEVPDFSLDDNLFEEGCSIDSLLDDMQSASTVDHEKDFDGKIMQCAPTMDGKQSHHQVGIQCVHVVDEHHHDHETEMVAHTMGNEVKKEFDLVEMMSHMNGSHYSTHSPR* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0747 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 242 IPR017930 -
Gso17g0747 475 Gene3D - 245 308 - -
Gso17g0747 475 SUPERFAMILY Homeodomain-like 189 285 IPR009057 -
Gso17g0747 475 CDD SANT 195 238 IPR001005 -
Gso17g0747 475 PANTHER BNAC07G50190D PROTEIN 134 318 - -
Gso17g0747 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 243 293 IPR017930 -
Gso17g0747 475 Pfam Myb-like DNA-binding domain 192 238 IPR001005 -
Gso17g0747 475 Pfam Myb-like DNA-binding domain 247 286 IPR001005 -
Gso17g0747 475 Gene3D - 191 244 - -
Gso17g0747 475 ProSiteProfiles Myb-like domain profile. 187 238 IPR001005 -
Gso17g0747 475 PANTHER MYB PROTEIN-RELATED 134 318 - -
Gso17g0747 475 MobiDBLite consensus disorder prediction 319 344 - -
Gso17g0747 475 CDD SANT 247 289 IPR001005 -
Gso17g0747 475 ProSiteProfiles Myb-like domain profile. 239 289 IPR001005 -
Gso17g0747 475 SMART sant 191 240 IPR001005 -
Gso17g0747 475 SMART sant 243 291 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0747 Gso-Chr17 6891359 6893369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0747 118 391 MYB Transcription Factor Family AT4G18770 55.439 4.40e-97 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g0747 Myb_DNA-binding 8.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0323 5 3366354 3368448 Gso17g0747 17 6891359 6893369 GST
Gso6g1526 6 15597647 15599583 Gso17g0747 17 6891359 6893369 PCT