Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0719 ATGAACCCCTACGACAATAGATATTCCGACGCCGCTTCTTTTCGCGGCCGTCGCAGTGATTTCGTTGGACCTATTCCGCCTCCGTCTTTCGTCGGCCGCGGCGGCGCAGTTCCCTACGGCGTCCCCGGACCCAACGGGTTCGGATCCGCACCCGTTGCTCCGGTACCACCCTTTGTGCCTCCTTCCGGAGGCTTCAACGTAGGTCGAGGCGGTGGCAGAGCGGGCAATGGTCCCGTGAGTGATAGAAAACACGACATGGGTCGTGGCCGTGGTGGCGGCGGCGGTGGTAGAGCCGGAGCTCACGGTTTTAGGGGCTCCGCGAGAGGAGGAGGTAGACACGGTGGTGGTTCTTCTAGGGATGATTTGAACAACATTGCACTCCCGAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAACTTCTATGTTGAGTGCCCTGCCGTGAGGGCCATGTCTGAGCAAGAAGTTTTGCATTACCGTGCCAGTAGAGAGATCACCGTGCAAGGCAACGATGTGCCAAAGCCTATTATGATGTTTCACGAGGCGAATTTTCCTGATTACTGCCTTGAGGTTATTGCCAATCTGCGTTTTGCTGATCCCACTCCAATTCAAGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCCGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCACAACCTCGATTGGCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTGGCTGTTCAAATTCAGGAAGAGGCTCTTAAATTTGGGTCTCGGGCAAATAAAAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGTCCCCAAATTCGGGAGCTTAAAAGAGGCGTCGAAATAGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACGAACCTGCGGAGAGTGACTTACCTTGTCTTAGATGAAGCTGATCGAATGCTAGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGCCCAGATTCGACCAGATAGGCAAACATTATTATGGAGTGCTACATGGCCAAGGGATGTTGAAACTCTGGCAAGGCAGTTTCTGCACAACCCATACAAGGTAATTATTGGGTCACCATACCTGAAGGCAAATCAATCTATAAATCAAATTGTTGAAGTTGTAACAGACATGGAGAAATACAATAGATTAATCAGACTGCTGAAAGAAGTGATGGATGGTAGCCGAATTTTAATATTTATGGAGACAAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAGTGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCAACAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGAACTGCATACACCTTTTTTACACATGCCAATGCTAAGTTTGCTAGGGATCTGATTAAGATTTTACAAGATGCTGGTCAGACTGTGAGTCCTGCGTTGACTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGGATCAGGGGGAGGTTTTCGCTCAAGAGGACGAGGAGGCTATGGAAATCGTGGTTTAACGTCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGCGGCCCTGGCATTGTCTATAG 1809 0.4831 MNPYDNRYSDAASFRGRRSDFVGPIPPPSFVGRGGAVPYGVPGPNGFGSAPVAPVPPFVPPSGGFNVGRGGGRAGNGPVSDRKHDMGRGRGGGGGGRAGAHGFRGSARGGGRHGGGSSRDDLNNIALPKQDFKNLVPFEKNFYVECPAVRAMSEQEVLHYRASREITVQGNDVPKPIMMFHEANFPDYCLEVIANLRFADPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLAHGDGPIVLVLAPTRELAVQIQEEALKFGSRANKRSTCIYGGAPKGPQIRELKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLLWSATWPRDVETLARQFLHNPYKVIIGSPYLKANQSINQIVEVVTDMEKYNRLIRLLKEVMDGSRILIFMETKKGCDQVTRQMRVDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPTSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKFARDLIKILQDAGQTVSPALTALVRSAGSGQFGSGGGFRSRGRGGYGNRGLTSGSNAIPLGSKRPWHCL* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0719 602 Gene3D - 151 388 IPR027417 -
Gso17g0719 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 384 IPR014001 -
Gso17g0719 602 Gene3D - 389 560 IPR027417 -
Gso17g0719 602 SMART ultradead3 197 400 IPR014001 -
Gso17g0719 602 MobiDBLite consensus disorder prediction 563 591 - -
Gso17g0719 602 CDD SF2_C_DEAD 397 527 - -
Gso17g0719 602 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 330 338 IPR000629 -
Gso17g0719 602 Pfam Helicase conserved C-terminal domain 408 518 IPR001650 -
Gso17g0719 602 Pfam DEAD/DEAH box helicase 202 373 IPR011545 GO:0003676|GO:0005524
Gso17g0719 602 SMART helicmild6 437 518 IPR001650 -
Gso17g0719 602 CDD DEADc_DDX5_DDX17 190 384 - -
Gso17g0719 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 412 557 IPR001650 -
Gso17g0719 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 538 IPR027417 -
Gso17g0719 602 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 77 587 - -
Gso17g0719 602 MobiDBLite consensus disorder prediction 64 123 - -
Gso17g0719 602 PANTHER LD32873P 77 587 - -
Gso17g0719 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 178 206 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0719 Gso-Chr17 6590401 6595664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0719 165 538 Eukaryotic Initiation Factors Gene Family AT3G19760 34.933 2.09e-68 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0719 K12823 - gmx:100817092 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0346 5 3637025 3642318 Gso17g0719 17 6590401 6595664 GST