Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0715 ATGGAGGCTCACTGTCTCTTTACTTCAAAGGTTGTCACGCCGAGCTCATTCCAGATGTTTCGTCTGTCTATATATGCATTTGATTTGAAATACGTGATTCTTCTCGGCCCTATAAATGGCCGTGAAACTCACTTACAAGAGTTTTCAAGCACACCCAAGACCAAATTCTTTTTCCCTCTTCATTCCTCAACGAAACTTGTCTCTGATTATCCAAAATCGCGAGACTCAATCATGGAATCCAAAGCCATAGATAATACTATTAAAATCCTCTATAGCTACGGCGGAAAGATCCTTCCTCGCCACACCGACGCCAAGCTCCGTTACTACGGCGGCCACACCAGAGTCCTCTCCCTCCATCCTTCCACTTCTTTCTCAGAGCTGATACTAAAGCTTACCGAGTTGTGCGCTTCGCCGGTCACACTTAAGTGTCCATTGCCGAACGGAGATTTGGACACCTTGATTTCCGTCACCAGCGACGAAGATTTGGCTAATATAATTCACTTATACGATCGAGCTTCTTCGTCGTTGCCTCATCGCTTGAAGATCAGAGCCATTCTTTCGCCGCCGAAGAAACTGTCTCCTTCTCCGTCTTCACCTTCTTCCAGCGCAGCTCACTCTCCGTCCGGTGGTTCGCCTCACTCCGCCGCCGATTCCCTGCCGTGCCCGGCGGCGCACCAGTTCGTCCGCCGTAAGTGCTCGCCGGTGCCGGTTGCGTATCCGATTAGCGTCCGTAGCGGAGCAGCAAAAGGCTGTATGTACACGAGGCAGTTAGACGGAAGTCCGAGATTCCTTTACCGTGGGGTTCACTGGAATAATTATTGCCACTGA 828 0.5012 MEAHCLFTSKVVTPSSFQMFRLSIYAFDLKYVILLGPINGRETHLQEFSSTPKTKFFFPLHSSTKLVSDYPKSRDSIMESKAIDNTIKILYSYGGKILPRHTDAKLRYYGGHTRVLSLHPSTSFSELILKLTELCASPVTLKCPLPNGDLDTLISVTSDEDLANIIHLYDRASSSLPHRLKIRAILSPPKKLSPSPSSPSSSAAHSPSGGSPHSAADSLPCPAAHQFVRRKCSPVPVAYPISVRSGAAKGCMYTRQLDGSPRFLYRGVHWNNYCH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0715 275 SMART PB1_new 101 187 IPR000270 GO:0005515
Gso17g0715 275 SUPERFAMILY CAD & PB1 domains 103 192 - -
Gso17g0715 275 MobiDBLite consensus disorder prediction 189 217 - -
Gso17g0715 275 CDD PB1_UP2 92 182 - -
Gso17g0715 275 PANTHER PB1 DOMAIN PROTEIN 78 275 - -
Gso17g0715 275 Gene3D - 105 185 - -
Gso17g0715 275 PANTHER OS05G0427100 PROTEIN-RELATED 78 275 - -
Gso17g0715 275 MobiDBLite consensus disorder prediction 196 213 - -
Gso17g0715 275 Pfam PB1 domain 103 180 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0715 Gso-Chr17 6565079 6568652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0715 68 167 MAP Kinase Kinase Kinase AT2G35050 44.660 3.30e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0715 - - gsj:114393520 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0715 17 6565079 6568652 Gso4g1579 4 45406974 45408096 PCT
Gso17g0715 17 6565079 6568652 Gso6g1502 6 15135051 15136371 PCT
Gso4g1579 4 45406974 45408096 Gso17g0715 17 6565079 6568652 PCT
Gso6g1502 6 15135051 15136371 Gso17g0715 17 6565079 6568652 PCT