Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0702 ATGGCACAAGATACTGTTTCTGGTGTTGACTCGCCTCGGCGACGTCTATTACGAGATCAGGTTCAAGTGGTTAAAAGAAAGGATTCCAATCGCTATGAAATTGTTCCTATCCAAGATTCTTTGTCATTTGAGAAAGGATTCTTCATATTTATTCGTGCATGCCAGTTGTTGGCTCAAAAGAACAATGGAATCATATTAGTAGGAGTTGCAGGTCCATCTGGAGCAGGGAAAACTGTTTTCACCGAGAAGGTCCTCAATTTTATGCCAAGCATAGCTGTCATAACAATGGATAATTATAATGATTCTAGTAGAATTATTGATGGAAACTTTGATGACCCTCGGTTGACAGATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCATTAAGTGAAAAATCACGACCTTTGCTTGATCTTCGTGTTTCTGTCACTGGTGGAGTTCATTTTGATCTTGTCAAGCGTGTTTTGCGGGACATTCATCGTGCCGGTCAAGAGCCTGAAGAAATAATCCATCAAATCTCTGAAACGGTGTATCCTATGTATAAAGCTTTTATTGAGCCAGATCTCAAAACAGCTCATCTAAAAATTATTAACAAGTTTAATCCATTCTCTGGATTCCAGAATCCCACTTACATATTGAAGTCAGCAAGAGCTGTGACAGTTGATCAAATCAAGGCAATTATTGCTGCAGAGCATACTGAAACCAAAGAGGAAACGTATGACATATTTCTTCTACCCCCTGGGGAAGACCCTGAAGCTTGTCAATCATATCTGAGAATGAGAAACCGTGATGGAAAGTACAATCTCATGTTTGAGGAATGGGTGACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGCGTGCGCCTTCTTGGAGGGCTGATGGCCTTGGGATACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGACCATAAAAACTGATTGGCTAGAACAACTTAATCGCACCTATGTTCAGGTTCAAGGGAAAGACAGAAACTATTGTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACTTACATTGAACAAATCCAGCTTGAAAAGCTTGTAAATGATGTGATGGCATTGCCAGATGATCTTAAGACAAAACTCAGCATAGATGATGACTTGGTTTCAAGCCCCAAAGAAGCCCTTTCCAGAGCTTCTGCAGATAGGAGAATGAAGTATCTTAATCGTGGTATTTCACAATCATATTCAACTCAAAGGGACAAGATTCTACCTAAGCTGACTAAACTTGCTATAAATAACAGAAGATTCGATGCAAGAGCGCTAGAATCACCTGCACCAATTGCTAACCAAGGAGTCATCACACAGCTTTCTGATCAAATTTCCACATTAAATGAAAGAATGGACGAATTCACCTCCCGTATTGAAGAGCTGAATTCAAAGTTCGCTATCAGTAAAGATTCAGCAGCCAGTCAACAAAACTTGGCTTTACAGGCTGAGGCCTGCAATGGCTCTGGCCCCACTTCCTTCTTTGTAACTGGACTAAGCAATGGCTCATTGACTGGATCATTGCTACCTAATTCTTCATCATCTTCTCAATTGGCTAATAAAGAGTCTCCCCTGATGGAAGAGGTACTAGTTATTGCACGAGGACAACGTCAAATCATGCATCAACTAGACACTCTGAGCAATTTTTTGCATGAATACTTTGGAGAAAGGTCACGCCTGGGAAGACCAGACCATACAGGAAGAATGCGTGAAGCTGAATCCGTTGCCATCCCCCTGGTTCTGACTCTGGCCTTTGGTGCTGTTGGTGTGCTTTTGTTCAGAGGTTTTACATCCCAAAAATAA 1986 0.4104 MAQDTVSGVDSPRRRLLRDQVQVVKRKDSNRYEIVPIQDSLSFEKGFFIFIRACQLLAQKNNGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKAGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYALSEKSRPLLDLRVSVTGGVHFDLVKRVLRDIHRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHLKIINKFNPFSGFQNPTYILKSARAVTVDQIKAIIAAEHTETKEETYDIFLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVTIKTDWLEQLNRTYVQVQGKDRNYCKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRMKYLNRGISQSYSTQRDKILPKLTKLAINNRRFDARALESPAPIANQGVITQLSDQISTLNERMDEFTSRIEELNSKFAISKDSAASQQNLALQAEACNGSGPTSFFVTGLSNGSLTGSLLPNSSSSSQLANKESPLMEEVLVIARGQRQIMHQLDTLSNFLHEYFGERSRLGRPDHTGRMREAESVAIPLVLTLAFGAVGVLLFRGFTSQK* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0702 661 Pfam Phosphoribulokinase / Uridine kinase family 67 235 IPR006083 GO:0005524|GO:0016301
Gso17g0702 661 Gene3D - 65 245 IPR027417 -
Gso17g0702 661 Coils Coil 499 526 - -
Gso17g0702 661 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 8 649 - -
Gso17g0702 661 Pfam CYTH domain 271 403 IPR023577 -
Gso17g0702 661 ProSiteProfiles CYTH domain profile. 247 409 IPR023577 -
Gso17g0702 661 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 235 IPR027417 -
Gso17g0702 661 Gene3D - 252 412 - -
Gso17g0702 661 PANTHER URIDINE KINASE 8 649 - -
Gso17g0702 661 CDD UMPK_like 66 238 - -
Gso17g0702 661 SUPERFAMILY CYTH-like phosphatases 259 406 IPR033469 -
Gso17g0702 661 PRINTS Uridine kinase signature 64 81 - -
Gso17g0702 661 PRINTS Uridine kinase signature 131 146 - -
Gso17g0702 661 PRINTS Uridine kinase signature 187 197 - -
Gso17g0702 661 PRINTS Uridine kinase signature 223 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0702 Gso-Chr17 6476341 6486087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0702 66 320 PRT Gene Family AT5G40870 25.758 4.63e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0702 K00876 - gmx:100811230 1246.49