Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0693 ATGTCGTCGTCGGCGTTGGGTTCCCCGAAGAAGCGGCTGAGAGCCCAAACAGAGGAGGAGGATGAGGAAGAGGTAGTTTGTTGCGGGATTTGCTACGCCGAGAGTGGGGTTTCGATTGCAGGGGAAATCGATTGCTGCAGCCACCACTTTTGCTTCGTTTGCATCATGGAATGGGCCAAGCACGAGTCTCGCTGCCCAATTTGCCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCTATGCATGGCGTATTTTCTTCTTCCAGGGACGTTAAGGTCCCCCATCGTGACCAGCTTTATCATCCTCATGGAAATATGGCAACTGGTCCTGCTGATTCTTATACTGAAACCAAATGTGGTGTTTGTCATGCCGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGCTATACTGTTCCTGAAGGTGATTGGTTTTGTCACGATTGTGCTATTTCCCGGAAGATCAATATCAAGGAAGACTCGGACCAACAAAATGTTGTGCCAACAGCTGAGCCCAGAGTAACCGTCGATATCTTTGATATTGTGAGGGAAACAGGCAGCCAGGTGGTTCAGAGACCAAGGGCATCTCCTTTACAACAGAACCTTTCATCTCCTTCCGTTATTCCTTTACCTGATAGGTTAAGTTACTTAAGTAGATTAAAAGGAAAAAGACCTGTCACAGGGTTCTGTCATATGCAGCGGAATGTAAAGGCTTTTCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACAGTTCCGTTGCAATTCATCTCAACCTGGAAGCACAGTTAGTCAAAAACAAGATTCTAGTTCCTTATCACATCACAAATTGGATGATTTGCATTCTATGGCTTCCACAAGCCTTCAACAATCGACTGTCCAAGGTGGTCCTTCTAATAAAATGTTGAATGAGAGAGTCTTTAAAGATGCTGACAAGGCATGGAAAATGATGGACAGGGCAAAGAAAATACAACTGCCTCATCATAGAACAGGCAGAGTAGATAAACCCTCATGCAGTGGAGGAGCTAGAAAAATATCATTAGCACATTGCAACTTCTCCGAAGTGAAAGATCAACATTCCAAAGCATTAGACTTGAGGAACACTAAAAAAGAGAAGCAGTGTGACTATTCTAGGCTCAACCAGAATTTGGAAAATCGCTCTACTCTGAAGTTGGAAGAGAAAAGGCAAAGTAGGGATACATGTGAGAAGATGATACATGTGAGGGACCATACTACTCATTCAAAAGGATATTGTGAACGCCCATTGTCAAGAAAGGTCCATACTAGTATCCAGGGTGGTCCCTGTCGTGAAGATGGACTGAGAAATGTTGCTGAGGAACAAAGCTTGTATGCTTGCTTGGTAACATCAGCAGATTTAGCTTCCTCTCGTGACAAATTTGGCAGTATGTTCTCTAATAGGGGTGTGAATCTTGTTAATGAAGAAAAGAGATTGGCTAAAAGCTCTGAGGATGGAAACACAAGAAATATTGTTGATTCAAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTGAAGCTCTTAACTAGAGATAAAAAATTAGGCTTTGATACCTTCAAGGTAGTTGCAAGGCAGGCCACTCATACCATCTTGGCTGCTTGCAGTTCTGATCAGCAAAAGTCTAGTACATCCTCCTCTAGCTCAGTATGCAGCCATGCCGACAATACTCCTCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTATAACTTTGTAAACAATGTTGTCCACTCCACCATATTGGAGAAAGTGGGTTGCGCTTGA 1836 0.433 MSSSALGSPKKRLRAQTEEEDEEEVVCCGICYAESGVSIAGEIDCCSHHFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQLYHPHGNMATGPADSYTETKCGVCHAGTDEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCAISRKINIKEDSDQQNVVPTAEPRVTVDIFDIVRETGSQVVQRPRASPLQQNLSSPSVIPLPDRLSYLSRLKGKRPVTGFCHMQRNVKAFRENWNALRSGSLQFRCNSSQPGSTVSQKQDSSSLSHHKLDDLHSMASTSLQQSTVQGGPSNKMLNERVFKDADKAWKMMDRAKKIQLPHHRTGRVDKPSCSGGARKISLAHCNFSEVKDQHSKALDLRNTKKEKQCDYSRLNQNLENRSTLKLEEKRQSRDTCEKMIHVRDHTTHSKGYCERPLSRKVHTSIQGGPCREDGLRNVAEEQSLYACLVTSADLASSRDKFGSMFSNRGVNLVNEEKRLAKSSEDGNTRNIVDSKTEIQSLVKLNLKLLTRDKKLGFDTFKVVARQATHTILAACSSDQQKSSTSSSSSVCSHADNTPQFQKSTLMPNCCRQCFYNFVNNVVHSTILEKVGCA* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0693 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 78 IPR013083 -
Gso17g0693 611 ProSiteProfiles Zinc finger PHD-type profile. 115 164 IPR019787 -
Gso17g0693 611 Coils Coil 375 395 - -
Gso17g0693 611 PANTHER HISTONE ACETYLTRANSFERASE 3 611 - -
Gso17g0693 611 MobiDBLite consensus disorder prediction 266 287 - -
Gso17g0693 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 183 IPR013083 -
Gso17g0693 611 Pfam PHD-finger 118 162 IPR019787 -
Gso17g0693 611 SUPERFAMILY RING/U-box 16 76 - -
Gso17g0693 611 ProSiteProfiles Zinc finger RING-type profile. 28 69 IPR001841 -
Gso17g0693 611 SMART PHD_3 117 162 IPR001965 -
Gso17g0693 611 SMART ring_2 28 68 IPR001841 -
Gso17g0693 611 MobiDBLite consensus disorder prediction 297 312 - -
Gso17g0693 611 Pfam Ring finger domain 28 69 IPR001841 -
Gso17g0693 611 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Gso17g0693 611 SUPERFAMILY FYVE/PHD zinc finger 110 164 IPR011011 -
Gso17g0693 611 MobiDBLite consensus disorder prediction 297 316 - -
Gso17g0693 611 PANTHER PHD-FINGER FAMILY PROTEIN 3 611 - -
Gso17g0693 611 MobiDBLite consensus disorder prediction 266 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0693 Gso-Chr17 6422832 6427327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0693 109 167 C2H2 Transcription Factor Family AT3G01460 36.667 1.46e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso17g0693 PHD 2.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0693 - - gmx:100808541 1194.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0144 5 1540472 1545219 Gso17g0693 17 6422832 6427327 GST