Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0692 ATGGAGCTTCCTCAAGCACGTCCCCTTGGAACCGAAGGGAGGAAACCGATGCATGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCTACCTTCTCAAGGAAGTTACCTCAAGACCCATGATTTCTTGCAGCCACTAGAACGGGTAGAAACAAAAGCCTGTGCAAAGGAAGAAGCCACAGAAGAAATATTATCGGTGGTTCAAAAGCAACGTCCACCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTTCATATGTTAATAATAATAATAATCAAAGGGGGGTTCTGAAACCAGAGACATCATCCCTTTTCGTGCGTCAAGCAACTAGTACGGATAAGAATGAAGAAAACTCTAACTGCAGTTCATATACTTCAAGTGGTTTTACTTTGTGGGAAGAGTCATCAGGGAAGAGGGGAAATACAGGAAAGGAGAATAATGCGGGCGAGAAACCCTCTCTAGGAGTGACAGAGTCTGCAGCGAAGCTAGGGCAGTGGACATCAACGGAGCGAACGTCACAGTCGTTTTCTAACAATCGTCACGGCGGTTTCAGCTCTCGCTCTTCATCTCAGACAACTGGGCAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAGGGATAGTAATGCCCAGGATGAAGTGCTAGAAAGCGAGGAAACATTTTTTCTCAAGAAAGAACCCTCCTCGAATACCCAAAGAGAACTCAGGGTGAAAGTGGATGCGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACACTCTGCAACAGAACAGCGGAGAAGGAGCAAAATTAATGACAGATTCCAAATGCTAAGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCGTTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGTAACGAGCCAGAAAAATTGATGCCATGGAGAAATAATGACAAGCCAGCAGAAACTTTTCAACCTCGTGGCACTGATAATGGATCAAGTCCATCTCCAACACTGCTGTTTGCTTCAAAGGTTGACGAGAAAAATATTACCATCTCCCAAACAATTCCTGGGAGTACCCAGAATGTAGAATCTGGCTTGAGCTCAGCAACTACCCCCAAGACAATGGATCATCATGCTGGAATGATGAACAAGGCTTTTCCAATTCCTATTCCTTCACAGCTAAATTTCTTCACTCCAACCCAAATAGGTGGTCCAGGTGGAGTAGTATCTCAGCTAACACATAGATCAGCATCAGATGCTGAGAAAACTAAATATCAACCTTCAGTGGAATGTCAGACTATGACTGCTACCAATGAAAAGCTGAAAGAGAAAGAGCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGCGTTTACTCAAAAGGGTTGTTGCATACGCTTACACATGCACTTCAAAGTTCAGGGGTGGATTTGTCACAGGCTAGCATCTCAGTGCAAATTGAACTTGGTAAACAAGCAAACATCAGACCAAGTGTACCAGTGTCAGTGTGTGCTGCTAAGGATGGTGACGTTCATTCTAACAATCAAAAGATGATGCGCTCTAGAGTTGCTAGCTCTGGGAAGTCTGACCAAGCAGTTAAGAAGCTAAAGACATGCAGAAGTTAA 1701 0.4333 MELPQARPLGTEGRKPMHDFLSLYSNSTAQQDPRLPSQGSYLKTHDFLQPLERVETKACAKEEATEEILSVVQKQRPPSVEHLLPGGIGTYSISHISYVNNNNNQRGVLKPETSSLFVRQATSTDKNEENSNCSSYTSSGFTLWEESSGKRGNTGKENNAGEKPSLGVTESAAKLGQWTSTERTSQSFSNNRHGGFSSRSSSQTTGQKNQSFIEMMKSARDSNAQDEVLESEETFFLKKEPSSNTQRELRVKVDAKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVVEYIHFLQEKVHKYEGSFQGWSNEPEKLMPWRNNDKPAETFQPRGTDNGSSPSPTLLFASKVDEKNITISQTIPGSTQNVESGLSSATTPKTMDHHAGMMNKAFPIPIPSQLNFFTPTQIGGPGGVVSQLTHRSASDAEKTKYQPSVECQTMTATNEKLKEKELTIEGGAISISSVYSKGLLHTLTHALQSSGVDLSQASISVQIELGKQANIRPSVPVSVCAAKDGDVHSNNQKMMRSRVASSGKSDQAVKKLKTCRS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0692 566 MobiDBLite consensus disorder prediction 144 209 - -
Gso17g0692 566 Gene3D - 262 335 IPR036638 GO:0046983
Gso17g0692 566 MobiDBLite consensus disorder prediction 144 160 - -
Gso17g0692 566 MobiDBLite consensus disorder prediction 541 557 - -
Gso17g0692 566 PANTHER TRANSCRIPTION FACTOR BIM1 1 563 - -
Gso17g0692 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983
Gso17g0692 566 MobiDBLite consensus disorder prediction 21 39 - -
Gso17g0692 566 Pfam Helix-loop-helix DNA-binding domain 266 315 IPR011598 GO:0046983
Gso17g0692 566 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 563 IPR044295 GO:0003700|GO:0006351|GO:0046983
Gso17g0692 566 MobiDBLite consensus disorder prediction 172 209 - -
Gso17g0692 566 SMART finulus 270 320 IPR011598 GO:0046983
Gso17g0692 566 MobiDBLite consensus disorder prediction 235 280 - -
Gso17g0692 566 MobiDBLite consensus disorder prediction 1 39 - -
Gso17g0692 566 CDD bHLH_AtBIM_like 263 339 - -
Gso17g0692 566 MobiDBLite consensus disorder prediction 535 566 - -
Gso17g0692 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 335 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0692 Gso-Chr17 6402412 6411135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0692 1 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 46.789 2.54e-122 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g0692 HLH 3.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0692 - - gmx:100808016 1117.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0145 5 1559864 1568908 Gso17g0692 17 6402412 6411135 GST