LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g0686	ATGGGGAGGGGAAGAGTGGATTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACTTTCTCCAAGAGAAGGTCTGGTTTGCTTAAGAAAGCGCGCGAGATTTCTGTGCTGTGCGATGCTGATGTGGCTCTCATCGTCTTCTCCACTAAAGGCAAGCTTTTCGACTACTCCAACGAACCTTGTATGAAAAGAATTCTTGAACGGTATGAGAGGTATTCGTATGCGGAGAGACAACTTGCTGGAGATGATCAAGCACCAAATGAAAACTGGGTTATAGAACACGAAAAGCTCAAGGCTAGGGTGGAGGTACTACAGCGAAATCAAAGGAATTTTATGGGAGAAGATCTGGACAGCTTAAATCTTAGAGGACTTCAGAGTTTGGAACAACAACTTGATTCTGCTCTCAAACTCATTAGATCACGAAAGAACCAAGCCATGAATGAATCTATTTCTGCGCTTCAGAAAAAGTATTCCATCATGCAGGATAAGTCACTCCGGGAACACAACAACTTGCTCTCCAAGAAGATAAAGGATAAAGAGAAGGAGCTGGCCCCACAAGAGCAAGATGGACTGCAAAATAACATGGATGTGACCTCTGTCCTTGTAACTCAACCACCGGAGTCCCTGACAATTGGAGGCTTCCCAGAAGCCAAATGTAATGAAGAAACTCCAACGTCGAGTCGACCTAAAACCATTCTTCCCCCTTGGATGCCTCTTCCTACAAATGAATAG	735	0.4435	MGRGRVDLKRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLFDYSNEPCMKRILERYERYSYAERQLAGDDQAPNENWVIEHEKLKARVEVLQRNQRNFMGEDLDSLNLRGLQSLEQQLDSALKLIRSRKNQAMNESISALQKKYSIMQDKSLREHNNLLSKKIKDKEKELAPQEQDGLQNNMDVTSVLVTQPPESLTIGGFPEAKCNEETPTSSRPKTILPPWMPLPTNE*	245

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g0686	244	Gene3D	-	13	85	IPR036879	GO:0003677\|GO:0046983
	Gso17g0686	244	MobiDBLite	consensus disorder prediction	207	244	-	-
	Gso17g0686	244	Coils	Coil	125	164	-	-
	Gso17g0686	244	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG	1	202	-	-
	Gso17g0686	244	CDD	MADS_MEF2_like	2	79	IPR033896	GO:0000977\|GO:0045944
	Gso17g0686	244	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Gso17g0686	244	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Gso17g0686	244	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Gso17g0686	244	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Gso17g0686	244	Coils	Coil	88	108	-	-
	Gso17g0686	244	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Gso17g0686	244	Pfam	K-box region	85	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gso17g0686	244	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Gso17g0686	244	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Gso17g0686	244	ProSiteProfiles	K-box domain profile.	88	183	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Gso17g0686	244	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Gso17g0686	244	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	1	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g0686	Gso-Chr17	6328769	6337546	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g0686	1	206	MADS-box Gene Family	AT1G26310	60.096	1.10e-82	246

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Gso17g0686		K-box	6.5e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g0686	K09264		K09260	gmx:100805348	468.774

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso17g0686	17	6328769	6337546	Gso4g1340	4	38580694	38592126	PCT
	Gso4g1340	4	38580694	38592126	Gso17g0686	17	6328769	6337546	PCT