Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0684 ATGGGAAGAGGGAGAGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACATTTGCCAAAAGGAGAAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCAGTACTTTGCGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCAGCAGCACCTCAAGTATGATGAAAACACTGGAGAAGTACCAGAAGTACAGCTACAGTGCACTGGAGACCACCCGTCCAATTAATGACTCTCAGAACTATCAGGAATATTTGAGATTAAAAGCAAGGGTAGAAGTTTTGCAATGTTCTCAAAGGAACCTACTTGGGGAAGATCTTGCCCAAATGAATACAAATGAGCTAGAGCAGCTTGAGAATCAACTGGAGGCAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGACCAACTTTCTGATCTTCATCACCGGGAAACATTGCTTATTGAAACCAATAATGTGTTAAGGAGTAAGTTGGAAGAAACTAATAATTCACAAGTTCAAGTAAGTCTAGCTTTGGAAGCTGGAGGGCCTAGCATTCAATACACCAACTTTCCACCTCAATCAGAGGGGTTCTTCCAGCCAATGGGAGTGAATCCCACCTTGCAAATTGGGTACAACCAGACTAATCCACATGATGCAAACGTTGGAGCTTCATCCTTAAGTATGCATGGATTCGCCTCTGAGTGGATGCTTTGA 732 0.429 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLEKYQKYSYSALETTRPINDSQNYQEYLRLKARVEVLQCSQRNLLGEDLAQMNTNELEQLENQLEAALKNIRSTKTQFMLDQLSDLHHRETLLIETNNVLRSKLEETNNSQVQVSLALEAGGPSIQYTNFPPQSEGFFQPMGVNPTLQIGYNQTNPHDANVGASSLSMHGFASEWML* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0684 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Gso17g0684 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Gso17g0684 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Gso17g0684 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso17g0684 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso17g0684 243 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso17g0684 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 226 - -
Gso17g0684 243 Coils Coil 116 143 - -
Gso17g0684 243 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso17g0684 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso17g0684 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso17g0684 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso17g0684 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso17g0684 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso17g0684 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0684 Gso-Chr17 6310948 6316852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0684 1 216 MADS-box Gene Family AT5G15800 61.538 2.23e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso17g0684 K-box 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0684 K09264 - gmx:100804810 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0155 5 1657663 1663361 Gso17g0684 17 6310948 6316852 GST