Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0680 ATGAACGGCTTAAGAAGTGAAAGAGCCCCTCTCTTGGAGGCTGAGCGTGCTGGAAGAGGAAAGAGGGATGGTGCCTCGGAAGGTCAAGCCTCAGACCTTGAGCATGGTGATGCAGTGCCGGCGGCAAATGTGGGATTCTGTAGGGTGCTTTCACTTGCAAAACCTGAGGCTGGAAAGTTGGTGATCGGTACTGTGGCTCTGTTGATTGCAGCCACATCAAGTATCTTAGTTCAAAAATTTGGTGGGAAGATAATTGACATTGTCTCTAGGGAAATGAAAACTCCAGAGGAGAAAGATGAAGCTTTGAATGCTGTTAAGAACACCATACTAGAAATCTTTCTGGTCGTTGTCTTCGGTTCAATTTGCACTGCACTTCGAGCTTGGCTTTTTTATACTGCTAGTGAAAGGGTTGTTGCACGACTGAGAAAGAATTTGTTCAGTCATCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGGGAGCTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCTGAGGCCCTGAGAAACTTTTCAACTGCATTAATTGGTCTGAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTCTTTCTGTTGCTGTTCGCAAGTTTGGCCGTTACCTGCGTGAACTTTCTCATAAAACTCAAGCTGCAGCTGCAGTTGCTTCATCAATAGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCATTTGCCCAAGAAGATTATGAAGTAACACGCTACTCAGAGAAAGTTAATGAAACACTTAATCTTGGTCTTAAACAAGCTAAAATTGTTGGACTCTTTTCTGGAGGCCTTAATGCTGCATCTACACTTTCAGTCATTATAGTTGTTATATATGGAGCTAATTTGACAATCAAGGGTTCCATGTCCTCGGGTGATCTTACATCTTTCATTCTTTATAGTCTCTCAGTGGGTTCTTCTATATCTGGTCTGTCAGGATTGTATACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGGGTATTTCAACTTTTGGATCGTACCTCATCCATGCCTAAGTCGGGAGATAAATGTCCACTGGGTGATCACGATGGGGAAGTAGAACTAGATGATGTGTGGTTTGCCTATCCATCACGCCCTAGTCATCCAGTGCTCAAGGGCATTACATTGAAACTGCATCCAGGAACAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGTGGAAAGAGTACAATTGCAAACTTGATTGAAAGATTTTATGATCCAACCAAGGGAAAGATTGTACTGAATGGGGTTCCTTTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTTGATGGCAAAGTGAACGATGTTGATATAGAAAATGCTGCTAAAATGGCCAATGCACATGAATTTATATCAAAATTCCCAGAAAAATACCAGACCTTTGTTGGAGAGCGTGGGGTAAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTCTTGGATGAAGCCACCAGTGCCCTAGATGCTGAAAGCGAATACCTAGTGCAGGATGCCATGGAGTCTCTCATGAAAGGAAGAACAGTTCTAGTCATTGCTCACAGGTTATCCACAGTTAAAACTGCTGATACTGTTGCAGTTATATCTGATGGCCAAGTAGTTGAGAGAGGCAACCATGAAGAGCTTCTCAGCAAGAACGGTGTCTATACTGCATTGGTCAAGAGACAACTGCAAACAACAAAAGCCGAAATCTCGGTTTAG 1902 0.4269 MNGLRSERAPLLEAERAGRGKRDGASEGQASDLEHGDAVPAANVGFCRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSREMKTPEEKDEALNAVKNTILEIFLVVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEVTRYSEKVNETLNLGLKQAKIVGLFSGGLNAASTLSVIIVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGDKCPLGDHDGEVELDDVWFAYPSRPSHPVLKGITLKLHPGTKVALVGPSGGGKSTIANLIERFYDPTKGKIVLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNDVDIENAAKMANAHEFISKFPEKYQTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMESLMKGRTVLVIAHRLSTVKTADTVAVISDGQVVERGNHEELLSKNGVYTALVKRQLQTTKAEISV* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0680 633 Gene3D - 379 628 IPR027417 -
Gso17g0680 633 PANTHER ABC TRANSPORTER B FAMILY MEMBER 25 3 627 - -
Gso17g0680 633 PIRSF ABC_prm/ATPase_B 8 632 - -
Gso17g0680 633 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Gso17g0680 633 CDD ABC_6TM_AtABCB27_like 63 359 - -
Gso17g0680 633 Gene3D ABC transporter type 1, transmembrane domain 45 374 IPR036640 GO:0005524|GO:0016021
Gso17g0680 633 MobiDBLite consensus disorder prediction 1 33 - -
Gso17g0680 633 SUPERFAMILY ABC transporter transmembrane region 48 365 IPR036640 GO:0005524|GO:0016021
Gso17g0680 633 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0680 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
Gso17g0680 633 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Gso17g0680 633 SMART AAA_5 412 606 IPR003593 -
Gso17g0680 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Gso17g0680 633 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 3 627 IPR039421 -
Gso17g0680 633 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso17g0680 633 MobiDBLite consensus disorder prediction 9 30 - -
Gso17g0680 633 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0680 Gso-Chr17 6240562 6247503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0680 62 623 Calmodulin-binding Proteins AT2G36910 37.368 3.06e-102 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0680 - - gmx:100810510 1181.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0158 5 1722187 1728482 Gso17g0680 17 6240562 6247503 GST