Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0675 ATGATGATAGAAAGTTCAAGTAAAGTTCATGGAGCCAATAACCAACAAGAGGGTGATGATAACAACATTAAAATTGAGAAGCTCTCAAAGGCACCCTCCACTTCCTCCTCATCAAGATCATGGTCAGCATTCAGAAATCCAAGAATTGTGAGAGTGTCACGTTCCTTGGGAGGAAAAGATAGGCACAGCAAGGTTTGCACCATTAGGGGACTGAGGGACAGAAGGATTAGACTTTCTGTTCCCACAGCAATTGAGTTATATGATCTTCAAGAAAAGCTTGGACTCAACCAACCTAGCAAGGTGGTAGATTGGTTGCTTGAAACCACCAAATCTGATATTGATAAGCTTCCACCACTTCAATTTCCTCACTGTTTTGCTCATCATCACCAACAAACCCTACTGCCAGGTACCTCTCAGTTTTCTCTTGGAGGCTTCTATGATGCTGCTGCTAATGGGGGAAATGAAAACCACCTCATGGCAACAAAGTCAACTAGGTATTGGGATATAGATTCACATTCACTAAATAATGGTAAGGATCTAGTTGAAAGTGTGTCAAACTCCCTAAAAGGAAAGAGCTGGATCAAAACAAATGAACAAGAAAATCATCAAGATGGAGGAATTGGTGGTAGTAGTAGCACTCATAACAATAGAGAGGAATATTCTTCAGCTCATTATAAGCTCTTCCCTATTGGGACAACTACTAATAACTCTTATTTACCTGGTTTGTTAAACAATGGCATGACACATAACTCATCCAACCACCATTCTGAGCCTTCAAGTCTATCTTTATCCCACTTTGGAAGCCATGGATTGTTTCCTTCATCACATAATGCCCATCCAAGCAGTTGCAGTGGTGTGCCATTTTCATCTTGTAATTTTTCTGCAGCATCATCTGGTCCCCAATTGCTTTTCTGTCCACCTACTTCTGCTACACCAGCATCTGCTTTTTACTCAGTGGAAAGTGATCCAAGACAATCCAACAACAATGTTCAGATCTTTAGCTCAAGTTCCCAAGTCATGATGCCTCATCCTCTCATCCAATCTCTTCATTCAACCAATTCAACTCTTAATCGACGCATTCCAACATCATTTAGTTCCAAACTTCTTGATTCAGATAACAACAATGATCGTAGCCAACCAAATAAGGGTAGTAGTACTACTCGTTCTTGA 1170 0.406 MMIESSSKVHGANNQQEGDDNNIKIEKLSKAPSTSSSSRSWSAFRNPRIVRVSRSLGGKDRHSKVCTIRGLRDRRIRLSVPTAIELYDLQEKLGLNQPSKVVDWLLETTKSDIDKLPPLQFPHCFAHHHQQTLLPGTSQFSLGGFYDAAANGGNENHLMATKSTRYWDIDSHSLNNGKDLVESVSNSLKGKSWIKTNEQENHQDGGIGGSSSTHNNREEYSSAHYKLFPIGTTTNNSYLPGLLNNGMTHNSSNHHSEPSSLSLSHFGSHGLFPSSHNAHPSSCSGVPFSSCNFSAASSGPQLLFCPPTSATPASAFYSVESDPRQSNNNVQIFSSSSQVMMPHPLIQSLHSTNSTLNRRIPTSFSSKLLDSDNNNDRSQPNKGSSTTRS* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0675 389 MobiDBLite consensus disorder prediction 1 24 - -
Gso17g0675 389 MobiDBLite consensus disorder prediction 1 19 - -
Gso17g0675 389 PANTHER TCP FAMILY TRANSCRIPTION FACTOR 2 382 - -
Gso17g0675 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 382 IPR005333 GO:0003700
Gso17g0675 389 Pfam TCP family transcription factor 58 165 IPR017887 -
Gso17g0675 389 MobiDBLite consensus disorder prediction 196 216 - -
Gso17g0675 389 MobiDBLite consensus disorder prediction 362 389 - -
Gso17g0675 389 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0675 Gso-Chr17 6201669 6203815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0675 42 237 TCP Transcription Factor Family AT5G60970 45.238 5.41e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso17g0675 TCP 2.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0675 - - gmx:102670246 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0163 5 1777841 1780027 Gso17g0675 17 6201669 6203815 GST
Gso17g0675 17 6201669 6203815 Gso4g1352 4 39285872 39288654 PCT
Gso4g1352 4 39285872 39288654 Gso17g0675 17 6201669 6203815 PCT