Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0660 ATGGCGTCGTCGTCGGCGGCAAAGCGATGCCACTACGAAGTCCTCGGCCTCCCCCGTGATTGCGCCCCCGATGAGATCCGTTCAGCCTACCGCCGCCTCGCCCTCCAGCGCCACCCGGACAAGCTCGTGAAATCGGGTCTCTCCCAAGAAGAAGCCACCGCGCAGTTCCAGGAACTCCAACACGCCTACGAAGTCCTCTCCGACCCCAAGGAACGCGCCTGGTACGACTCCCACCGCTCCCAAATCCTCTTCTCCGACCCCAACACCGTCTCCAACTCCTTCGTCCCCGACCTCTTCTCCTTCTTTTCCAACACCGTCTATTCCGGCTACACCAACACCGCAAAGGGATTCTACAAGGTCTATTCCGATGTATTCGATAAAATCCACGCCAACGAGATCAATTTCGCGCGCAAATTGGGGCTTGACTCTGATGCGGTTAGACAGGCGCCTGTTATGGGTAATTTAGATAGTCCATACGCGCAGGTTACTGCGTTTTATAGTTATTGGTTAGGGTTTTGTACTGTGATGGATTTTTGCTGGGTGGATGAGTACGATGTTATGGCCGGGCCGAACCGGAAGTCGCGGCGGATTATGGAGGAGGAGAATAATAAGGTGAGGAGGAAGGCGAGGAGGGAGTATAATGACACTGTGAGGAGGTTGGGGGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAGGAGTGTGGAGGAGGAGAGGAAGAAGGAGGAGGAGAGGGAGAGGAAGAGGAGGTTGGAGAAGGAGAAGAAGGAGAGGGCTATGGCGTACGAGGAGCCAGAGTGGGCTAAGGTTGACGAGGATGTGGAGGAGGTGGTTGAGGAGGAGGTGGAGGAGAGGGAGAATGAGGAGTTATACTGTGTGCTGTGTAAAAAGAAGTTTAAAAGTGACAAGCAGTGGAAGAACCACGAGCAGTCCAAGAAGCATAAGGAGAGGGTCGCTGAGTTTAGGGGTTCGATTGGTGATGATGAGGAGGATTTGGAAGAAGAAGAAGAAGGAGAGGAGGGATTGGAAAGTGCAGAAGTTGGGGTGAATGATGAGACTGATAATGGGATTGGTGATTTGGAGGCGAGGATTAAAAATGGTCTTAATGTTGAAGAGGGGGAGACTAGAAATGGGATTGAACTGAATGATGATGATGAGTTTATTGATGCCTCACGTGTGAAGGAAGGCGAAGAGGCCGGTGTGTCTGTTAGTTTTGATGAGGATGGCAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTGATATTGAAAATGGTGTTCTTGAAGCAATGGTGGCTGGGCACAAGAACAGAAAACCACGAGCTTCAACACACAAACCCAAGACTTCAGTGGCACCATTGCCAATTGAAAATGAGAATGATGATGAGCTTGGCCCTATGGAATATAACAACCAAAAGGGGGCAAGAAAGAAACGTAGAGCCAAGAAAGAGAAGGGTAGGAAAAATTGGGAAGAGTCTCAGGAGGCTGCTGCCAGTGGGGATTATGAGGATATAATCAGTAATGCAAATGATAATTCTCATGCAGAGGAGTCTTCTTCCCAACATTTTATGGAAAATGAGGATAATGGTATAGAGAATGAGCAGGTTGGTAGAGATGAGAAGATTTCTAATCAACCGGCTGATAAAAAAGGTAGAGATAAGAATATTTCTCAGCAAGCGGCTGATAAAAAAGGAGCTGGCAAGGACACAAAAACTAAAGCAAAAGTTTCATCCAAAGGAAGAAAAGGAAAAGTGGCATCAAAGAATGTTGGCAATATTTGTGATGCATGTGGAGAGGAGTTTGAGACAAGGAATAAATTACATAAACATCTTGGCGATTCTGGGCATGCGACAATAAAAGGTCGATGA 1881 0.479 MASSSAAKRCHYEVLGLPRDCAPDEIRSAYRRLALQRHPDKLVKSGLSQEEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNTVSNSFVPDLFSFFSNTVYSGYTNTAKGFYKVYSDVFDKIHANEINFARKLGLDSDAVRQAPVMGNLDSPYAQVTAFYSYWLGFCTVMDFCWVDEYDVMAGPNRKSRRIMEEENNKVRRKARREYNDTVRRLGDFVKKRDKRVIDMKVKRSVEEERKKEEERERKRRLEKEKKERAMAYEEPEWAKVDEDVEEVVEEEVEERENEELYCVLCKKKFKSDKQWKNHEQSKKHKERVAEFRGSIGDDEEDLEEEEEGEEGLESAEVGVNDETDNGIGDLEARIKNGLNVEEGETRNGIELNDDDEFIDASRVKEGEEAGVSVSFDEDGNEEEEEEEEEGDIENGVLEAMVAGHKNRKPRASTHKPKTSVAPLPIENENDDELGPMEYNNQKGARKKRRAKKEKGRKNWEESQEAAASGDYEDIISNANDNSHAEESSSQHFMENEDNGIENEQVGRDEKISNQPADKKGRDKNISQQAADKKGAGKDTKTKAKVSSKGRKGKVASKNVGNICDACGEEFETRNKLHKHLGDSGHATIKGR* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0660 626 MobiDBLite consensus disorder prediction 522 580 - -
Gso17g0660 626 ProSiteProfiles dnaJ domain profile. 10 79 IPR001623 -
Gso17g0660 626 MobiDBLite consensus disorder prediction 376 591 - -
Gso17g0660 626 SUPERFAMILY beta-beta-alpha zinc fingers 286 335 IPR036236 -
Gso17g0660 626 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Gso17g0660 626 ProSitePatterns Zinc finger C2H2 type domain signature. 598 620 IPR013087 -
Gso17g0660 626 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 4 626 IPR044648 -
Gso17g0660 626 Gene3D Classic Zinc Finger 283 348 - -
Gso17g0660 626 Gene3D DnaJ domain 1 92 IPR036869 -
Gso17g0660 626 PRINTS DnaJ domain signature 12 30 IPR001623 -
Gso17g0660 626 PRINTS DnaJ domain signature 30 45 IPR001623 -
Gso17g0660 626 PRINTS DnaJ domain signature 51 71 IPR001623 -
Gso17g0660 626 SMART c2h2final6 596 620 IPR013087 -
Gso17g0660 626 SMART c2h2final6 295 319 IPR013087 -
Gso17g0660 626 SUPERFAMILY Chaperone J-domain 7 103 IPR036869 -
Gso17g0660 626 SMART dnaj_3 9 71 IPR001623 -
Gso17g0660 626 MobiDBLite consensus disorder prediction 307 330 - -
Gso17g0660 626 CDD DnaJ 10 68 IPR001623 -
Gso17g0660 626 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Gso17g0660 626 MobiDBLite consensus disorder prediction 407 429 - -
Gso17g0660 626 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Gso17g0660 626 MobiDBLite consensus disorder prediction 376 406 - -
Gso17g0660 626 Pfam DnaJ domain 11 76 IPR001623 -
Gso17g0660 626 ProSitePatterns Nt-dnaJ domain signature. 56 75 IPR018253 -
Gso17g0660 626 MobiDBLite consensus disorder prediction 331 352 - -
Gso17g0660 626 Coils Coil 239 266 - -
Gso17g0660 626 ProSiteProfiles Zinc finger C2H2 type domain profile. 596 625 IPR013087 -
Gso17g0660 626 MobiDBLite consensus disorder prediction 307 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0660 Gso-Chr17 6111916 6115131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0660 1 626 C2H2 Transcription Factor Family AT1G74250 50.677 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0660 K09506 - gmx:100795949 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0175 5 1880419 1883827 Gso17g0660 17 6111916 6115131 GST