Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0651 ATGGAAGGAGATCACCATCGAATTCAAGAATTGAAACACGCGTGCAAGTTCTGCGGCAAGTGCTTCCCCTGTGGCAGATCCTTGGGGGGTCACATGAGGTCTCACATCACCAACTTGTCGTCTGAGATGATGAATGAAAAAAAAGAAAAGCTTTCATCTTCTCTCAACAATGGTGGAGACAAAGATTCTGAAGCTGCTGCTGCAACTAACGCTGCTGCAAGCTATGGTCTCAGAGAGAACCCAAAGAAGACTTGGAGAATCTCAGATTATTCAAGTGAAGACCCTTTGGTGTTTGACAAGTTCTGCAAAGAGTGTGGCAAAGGGTTTCACTCTTGGAAGGCCTTGTTTGGCCACATGAAATGCCATTCAGAGAAAGAGAGAGTTTCCAACAGCTTGGAAGATCAAGATTCTTGGACTAATAGTGCTAAGATGGTTATGGATAGCCAATCTGATAATGAAGCAACTGCTCCAAATAAGAGAAGAAGGTCCAAGAGAAGAACAAGGTACACGGTGGTTGCTTCTTCTGCAGCAGCAGCAACAACTTCTTCTGTTGTGTCTTTTGCGAATCCTTCATCTTCTTCTCTCTCTGAGGTTGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGTAGGGATGTGAGTCCTTGGAGTGGTCGTCATTCTGTGGCTGAGTCCTCTGACAATAACTCTGCTTATTTCGAAGCTCGATCTTCGGTTCGAACTAATTTGGTCACCAAATTTGATTGCAGCAACAAGAACTTCCCTCCTAAAACAGCAAAAGTGACCAAGCAAAGTGACAACAAGTGGGAGGTTGGCAATTCGGAAAATCCCAACTCAATCAGGGGGACGAGTTCACAACTTTTGACTACTATTGCTGCTAGTGATAATATTACTACTGAGATTCCTGAAAATGGATTTAGAGTGAACAAAAGTAGAGTTTCCAATAAAGGGTATGAAAGAGCCAAGTCTGAGCTTGAGTATGTGTCTGCATTGGAGGATTCTGAAGGTGAACATGGGAGGAGCAGAGTCAATGGAACAGAATCAGTTTTATCAAAGTCGGTTACTACTACTGGCAATAAGTACAGTTCAATCAAGACAAAGTTTTCTGGTTCTGAAATGAAGTCAAATAAGAACTTGGTGGACAAGGCTTCAGAAGCTGAATCTAGCAAGAACTCTAACAAGAGAGGCAAGTTTGAGTGTACCACTTGCAACAAAATCTTCCACTCATACCAAGCACTTGGAGGCCATAGAGCTAGCCACAAGAAGATCAAAGGATGCTTTGCTTCAACGAATGAGAGCAGTGAGAACAGCATTGAAACTGATCCCTCTCCTGACCCAATAGCAACTGAAAACAAGCTCATGAAGAACAGTGATAGTGAGTATCTGGTGGAACATCAACATGGTGCTAGTCTACATAATGAGGGGGAAACAGTTAATGAGTCCAAGAAGAGCAAGGGACACCATGAGTGCCCAATTTGCTTCAAGGTTTTTCCTTCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCATATGGTTGGTGGGTCTGAGAGTAGAAACTTTCAAACAATTGTGCCTCAGGAACCAGTGGCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTTCTACTGAGGAAGAAAGCTATAGCCATGCTGACTCTAACAGTAACAGACCCTGGTGGATAGTAGAAGACAACCACAAACAGGAGGCACTGGTAGGCCTTATCTCATAG 1743 0.436 MEGDHHRIQELKHACKFCGKCFPCGRSLGGHMRSHITNLSSEMMNEKKEKLSSSLNNGGDKDSEAAAATNAAASYGLRENPKKTWRISDYSSEDPLVFDKFCKECGKGFHSWKALFGHMKCHSEKERVSNSLEDQDSWTNSAKMVMDSQSDNEATAPNKRRRSKRRTRYTVVASSAAAATTSSVVSFANPSSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGRHSVAESSDNNSAYFEARSSVRTNLVTKFDCSNKNFPPKTAKVTKQSDNKWEVGNSENPNSIRGTSSQLLTTIAASDNITTEIPENGFRVNKSRVSNKGYERAKSELEYVSALEDSEGEHGRSRVNGTESVLSKSVTTTGNKYSSIKTKFSGSEMKSNKNLVDKASEAESSKNSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASTNESSENSIETDPSPDPIATENKLMKNSDSEYLVEHQHGASLHNEGETVNESKKSKGHHECPICFKVFPSGQALGGHKRSHMVGGSESRNFQTIVPQEPVAEIRDFLDLNLPASTEEESYSHADSNSNRPWWIVEDNHKQEALVGLIS* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0651 580 Pfam C2H2-type zinc finger 490 514 - -
Gso17g0651 580 Pfam C2H2-type zinc finger 401 425 - -
Gso17g0651 580 Pfam C2H2-type zinc finger 102 124 - -
Gso17g0651 580 Pfam C2H2-type zinc finger 13 35 - -
Gso17g0651 580 ProSitePatterns Zinc finger C2H2 type domain signature. 403 423 IPR013087 -
Gso17g0651 580 MobiDBLite consensus disorder prediction 375 399 - -
Gso17g0651 580 MobiDBLite consensus disorder prediction 260 285 - -
Gso17g0651 580 ProSitePatterns Zinc finger C2H2 type domain signature. 493 513 IPR013087 -
Gso17g0651 580 Gene3D Classic Zinc Finger 2 126 - -
Gso17g0651 580 SUPERFAMILY beta-beta-alpha zinc fingers 13 122 IPR036236 -
Gso17g0651 580 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 580 - -
Gso17g0651 580 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Gso17g0651 580 MobiDBLite consensus disorder prediction 381 397 - -
Gso17g0651 580 MobiDBLite consensus disorder prediction 144 168 - -
Gso17g0651 580 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 580 - -
Gso17g0651 580 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Gso17g0651 580 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 35 IPR013087 -
Gso17g0651 580 SUPERFAMILY beta-beta-alpha zinc fingers 401 513 IPR036236 -
Gso17g0651 580 MobiDBLite consensus disorder prediction 44 67 - -
Gso17g0651 580 ProSiteProfiles Zinc finger C2H2 type domain profile. 401 428 IPR013087 -
Gso17g0651 580 ProSiteProfiles Zinc finger C2H2 type domain profile. 491 513 IPR013087 -
Gso17g0651 580 SMART c2h2final6 13 35 IPR013087 -
Gso17g0651 580 SMART c2h2final6 491 513 IPR013087 -
Gso17g0651 580 SMART c2h2final6 401 423 IPR013087 -
Gso17g0651 580 SMART c2h2final6 100 122 IPR013087 -
Gso17g0651 580 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0651 Gso-Chr17 6027312 6030129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0651 7 549 C2H2 Transcription Factor Family AT1G26610 35.907 4.91e-69 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g0651 zf-C2H2_6 2.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0651 - - gmx:102666705 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0187 5 1994519 1997043 Gso17g0651 17 6027312 6030129 GST