Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0642 ATGGGGGTGGAAGACCGTTTTCCGGTGGGTATGCGTGTACTTGCCGTTGACGACGACGAAACGTGCCTCTCAGTGTTGGAGAACCTGCTTCGCAAATGCCAGTATAATGTTACTACAACTAATCAGGCAATTAAGGCGCTAGACATGTTGAGGAAAAACAGAAACAAGTTTGACCTTGTTATTAGTGATGTGAATATGCCAGACATGGATGGGTTTAAGCTGCTTGAGCTAGTGGAACTTGAAATGGACCTACCAGTTATCATGTTGTCAGGATACGGTGATAAAGAGCGGGTCATGAGAGGTGTTATACACGGCGCTTGTGACTACTTAACGAAACCGGTTCGAATTGAAGAGTTACAGAACATATGGCAACATGTAGTGCGAAGGAGGATTGATAGCAAGGATAAGAATAAGACTGCAAGTGAGGGAAAAGCCTGCAGTATGGCTGGTAAGCTTGCAAATGAGGAGAAAGCCTGCTATATGGCTGGGGAATGTAGTCAAGCCATGGCATCAAAAAGTAATGCCGACCAGAATATAAAACTGGGTCAAAAAAGGAAGGAACAAAGCGAGGATGAGGAAGAGGAAGAATATGATCAAGAAAATGAAGAACCCTCAAATCAGAAGAAGCCTCGTTTAGTTTGGGATGCCGAGTTGCATAGGAAATTTCTTGCTGCGATTAATCATCTGGGAATTGACAAGGCTTTCCCCAAGAGAATACTGGACCTGATGAATGTTGAAGGACTTACACGAGAAAACATAGCAAGCCATCTGCAGAAATACAGACTCGGTCTCAAAAAATCCACTCAACAGCCTAGCATGGTTGCTACGTTGGGTAATAGTGATCCTTACCAGCAGATGGATTCAATAGAAGGCTTTCGCACTTTGTCGGGATCAGGAGGAATGATAAGCACCACACTACCATCATATGCATCTGGTGGACTGTTTTGTAGGCTGAACTCCCCATCTGGCTTGAGAGGAATTAACTCTTCTCTTCTTGTTCAGCCTGTTCATTCTCAAAACATTGATAGCAGGTCCATAAAAACACTTGGAAACATGCAGCTATCCATGTTTTCTGCAAATCAAACCTCAAGTTTATTACAGGGCATTCCAACATCAATCGATGGAAATTCCCCACCAACACATAATTCTGGAGCATTCGGAAATCACTCTTCTCTTGGAGCTGCTTCGGTGAAAACACAATCCTTTGACCCTGGCATCTGTGAGTTGGGTTATAATCGGTGTAATAAAAGCTGGCAGGGAACAACTCAGATATCTAAGTTTCCTGCCAATACTTCTGCAGTCAGTAACAATGATCAGCTGGCTCAAAATAACTTGAACTTTTCCTCATCCACTTTTTGCAGTGGGAACAGCCCAGTTGATTTTTCTTCCACTAGTGTTGTTGCTCCTCCCTTGGAGGATGCTAGAGGTAAGCTACGATGTCAAGAAGGCTTACTTGAGAATATCTTACTGACATCATGTTACACCCAGCATCAGAGCTGGGAAGCAGATAACCGGGGTTGCAACAAAGAAATGAGTCAAACTTTCAACACCATAAAGTCTGTCTCTCCTAATGGAGACACTAGTTCCTTAGGACATAGTTTAGACCAAAACAATACAGTTAGCAGCAAGAGAATTGATGTATCTTTGGTTAATCCATCAGTCACGCAGTCTAGTGAAGATGAGAAATTCTATTCGATGGAGTCAATTGATGGCTGCATTTTGCAGAGCATGGAGTCCCAAGAAGATCTCATGCAGAATACTTTTGAGTCGTTGGATGACATAATGAGTGAAATAACCAAACAGGAGCAAAATGCCATTATGTTGATGGATGGAGAAATGGAGTTTGATGCTTACCATGTTGGATCATGCATTTGA 1875 0.4277 MGVEDRFPVGMRVLAVDDDETCLSVLENLLRKCQYNVTTTNQAIKALDMLRKNRNKFDLVISDVNMPDMDGFKLLELVELEMDLPVIMLSGYGDKERVMRGVIHGACDYLTKPVRIEELQNIWQHVVRRRIDSKDKNKTASEGKACSMAGKLANEEKACYMAGECSQAMASKSNADQNIKLGQKRKEQSEDEEEEEYDQENEEPSNQKKPRLVWDAELHRKFLAAINHLGIDKAFPKRILDLMNVEGLTRENIASHLQKYRLGLKKSTQQPSMVATLGNSDPYQQMDSIEGFRTLSGSGGMISTTLPSYASGGLFCRLNSPSGLRGINSSLLVQPVHSQNIDSRSIKTLGNMQLSMFSANQTSSLLQGIPTSIDGNSPPTHNSGAFGNHSSLGAASVKTQSFDPGICELGYNRCNKSWQGTTQISKFPANTSAVSNNDQLAQNNLNFSSSTFCSGNSPVDFSSTSVVAPPLEDARGKLRCQEGLLENILLTSCYTQHQSWEADNRGCNKEMSQTFNTIKSVSPNGDTSSLGHSLDQNNTVSSKRIDVSLVNPSVTQSSEDEKFYSMESIDGCILQSMESQEDLMQNTFESLDDIMSEITKQEQNAIMLMDGEMEFDAYHVGSCI* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0642 624 SUPERFAMILY CheY-like 10 134 IPR011006 -
Gso17g0642 624 Gene3D - 205 267 - -
Gso17g0642 624 MobiDBLite consensus disorder prediction 172 210 - -
Gso17g0642 624 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 265 IPR017930 -
Gso17g0642 624 Gene3D - 10 146 - -
Gso17g0642 624 ProSiteProfiles Response regulatory domain profile. 12 127 IPR001789 GO:0000160
Gso17g0642 624 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Gso17g0642 624 SMART REC_2 11 123 IPR001789 GO:0000160
Gso17g0642 624 Coils Coil 183 203 - -
Gso17g0642 624 PANTHER TWO-COMPONENT RESPONSE REGULATOR 375 605 IPR045279 GO:0009736
Gso17g0642 624 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 377 IPR045279 GO:0009736
Gso17g0642 624 CDD REC_typeB_ARR-like 13 127 - -
Gso17g0642 624 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 377 - -
Gso17g0642 624 PANTHER TWO-COMPONENT RESPONSE REGULATOR 375 605 - -
Gso17g0642 624 Pfam Myb-like DNA-binding domain 213 261 IPR001005 -
Gso17g0642 624 PIRSF RR_ARR_type-B 1 624 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso17g0642 624 Pfam Response regulator receiver domain 13 121 IPR001789 GO:0000160
Gso17g0642 624 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0642 Gso-Chr17 5955399 5959207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0642 5 324 Response Regulator Gene Family AT2G25180 54.601 3.62e-105 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso17g0642 Response_reg 5.8e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0642 - K14491 gmx:100803040 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0642 17 5955399 5959207 Gso17g0642 17 5955399 5959207 ECH