Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0636 ATGCAACCTTGTAGCAGAGAAATGCAAGGCCCTAACACTACTAACTCTCTCTTCAACAACAATACTACCTGTAGTAATCAGCCGCAGATCCACTTCGACACCACTTCCAACGACGATTTCCTCAAGCAAATGCTTTCCAACCTCCCTTCTTCTTCATGGAACCTCCACGAAACCACACCCGATAACAACGTCGTTTTCCCCTACGACGTCGAACAAGCCAACTTGGCCTCCAAGTTTCGCAACCACCAGATCACCACCGACAACGACAAGGCCTCCGCTCTCATGCTCCACCACCACCTCCTCCTCTCCTCCTCCGCCGCTGCCGCCAACTCCCAACTCCTCCACATGCCCTTTGACTCCTCCGCGCCAAACGACGTCGTTGACGCCCCCTCCTTCAAATCTCTCACTCCCAACGGTGAGCCTGCTTCCGTTCAAGCTCTCTACAACGGCTTCTCTGGATCTCTTCAACCCAATAATCAAACTCACCATTTTCAACAACACCCTCAGCCTCAGAGTTTTGGAGCTTCGGCTCCGGCTAACGGTGGCGGTTCGGGTCAGCCGAAGCAGAGGGTTAGAGCCAGGAGAGGACAAGCCACGGACCCACACAGCATCGCCGAAAGGTTACGGAGGGAGAGAATCGCAGAGCGAATGAAGGCCCTACAAGAACTAGTTCCTAATGCCAACAAGACTGACAAGGCCTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAGCTCCAAGTCAAGGTTTTAAGCATGAGCAGATTGGGCGGTGCAGCAGCTGTGGCACCCCTTGTTGCTGAGGGTGGCGGTGACTGCATCCAAGCCAAACGCAGCAACTCAAACGACAGCCTCGCCATGACGGAGCAACAGGTGGCGAAGCTGATGGAGGAAGACATGGGTTCCGCCATGCAGTACTTGCAGGGCAAGGGTCTATGCCTGATGCCTATTTCGCTCGCCAGCGCAATCTCCAAAGCCACGTGTCACCCCTTCATCAACGGTGATGGGCCCTCCTCTCCCCGAATGTCCGCGCTCACTCTGGCTAACGCCGTCGTCAAAGACGCGGCCTCCGTTTCCAAGTCCTGA 1092 0.5485 MQPCSREMQGPNTTNSLFNNNTTCSNQPQIHFDTTSNDDFLKQMLSNLPSSSWNLHETTPDNNVVFPYDVEQANLASKFRNHQITTDNDKASALMLHHHLLLSSSAAAANSQLLHMPFDSSAPNDVVDAPSFKSLTPNGEPASVQALYNGFSGSLQPNNQTHHFQQHPQPQSFGASAPANGGGSGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVAEGGGDCIQAKRSNSNDSLAMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLASAISKATCHPFINGDGPSSPRMSALTLANAVVKDAASVSKS* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0636 363 Coils Coil 280 300 - -
Gso17g0636 363 MobiDBLite consensus disorder prediction 129 202 - -
Gso17g0636 363 MobiDBLite consensus disorder prediction 1 20 - -
Gso17g0636 363 SMART finulus 203 252 IPR011598 GO:0046983
Gso17g0636 363 MobiDBLite consensus disorder prediction 136 183 - -
Gso17g0636 363 PANTHER TRANSCRIPTION FACTOR BHLH69 29 338 - -
Gso17g0636 363 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Gso17g0636 363 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 338 - -
Gso17g0636 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 257 IPR036638 GO:0046983
Gso17g0636 363 Gene3D - 192 254 IPR036638 GO:0046983
Gso17g0636 363 Pfam Helix-loop-helix DNA-binding domain 202 247 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0636 Gso-Chr17 5916731 5920665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0636 34 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 48.387 2.43e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g0636 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0636 - - gmx:100801457 620.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0636 17 5916731 5920665 Gso17g0636 17 5916731 5920665 ECH