Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0628 ATGGGGTTGGGAGTGTTTGGTTCTGTTCTGGTTTTGGCACTCTTATTCAAGCATTTGGCATCTCAGCAGCCAAATACTGATGAGTTCTTTGTGTCTGAGTTCTTGAAGAAGATGATGGGTTTAGCATCTTCCCAAGGCTACAACTTCTCTGCTTCTGTCTGTTCATGGAAAGGGGTTTCTTGTGATGCCAATAGAGAACATGTTGTTGACTTAGTCTTTTCTGGTATGGACCTCTCTGGCACTATACCTGATAACACCATAGGCAAGCTGGGAAAACTGCAATCTTTGGATCTTAGCCACAACAAAATCACTGACTTGCCTTCAGATTTTTGGAGTTTGAGCACTGTGAAGAGCCTTAACCTCTCCTCCAATCAGATTTCTGGCTCATTGACTAACAACATTGGCAACTTTGGTTTGCTAGAAAGCATTGACTTGTCCAGCAACAATTTCTCAGAGGAAATTCCTGAAGCTGTTAGCTCATTGCTGAGTCTAAGAGTCCTAAAACTTGACCAAAACAGGTTTGCACACAACATACCTTCTGGGATTCTCAAGTGCCAGTCTCTTGTTTCAATTGATGTTTCTTCAAATCAGCTGAATGGAACACTTCCAGAAGGTTTTGGTGCTGCTTTTCCTAAGCTTAGGGTCTTGAACCTTTCTGGGAATAATATGTATGGTCATATTTCAGATATTTCTGGGTTGAAGTCCATTGTGAATCTCAACATATCAGGGAATTCGTTTCAGGGTTCTATTGTGGATTTGTTTCAGGGAAGGTTGGAGGTTCTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTCCACAGGTCGTAGAGGTTTCTACATCAAAGACAGGCAAGCATGGACATGCAAAGTGCCACTTTGTTGCAATTGATATTTTTAATGGGAAAAAGCTTGAAGATATTGTTCCATCATCACACAACTGTGATGTTCCACATGTGAATCGCACTGACTATCAGCTTATTGATATCTCTGAAGACGGCTTTGTGAGTCTGTTGACTGATAATGGAAATACCAAGGATGATCTGAAGCTTCCCACGGATGAGGCGTTGCTTTCTCAGATTAAAGATGGATTTGCTGAAGGAAAAGATCTTGTGGTTTCTGTCATGTCTGCAATGGGAGAAGAACAGATCTGTTCGCTGAAGGACATCGGTCCAAAAAATTAA 1182 0.4154 MGLGVFGSVLVLALLFKHLASQQPNTDEFFVSEFLKKMMGLASSQGYNFSASVCSWKGVSCDANREHVVDLVFSGMDLSGTIPDNTIGKLGKLQSLDLSHNKITDLPSDFWSLSTVKSLNLSSNQISGSLTNNIGNFGLLESIDLSSNNFSEEIPEAVSSLLSLRVLKLDQNRFAHNIPSGILKCQSLVSIDVSSNQLNGTLPEGFGAAFPKLRVLNLSGNNMYGHISDISGLKSIVNLNISGNSFQGSIVDLFQGRLEVLDLSRNQFQGHIPQVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDEALLSQIKDGFAEGKDLVVSVMSAMGEEQICSLKDIGPKN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0628 393 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Gso17g0628 393 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 318 387 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gso17g0628 393 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 283 290 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gso17g0628 393 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 279 - -
Gso17g0628 393 SMART LRR_typ_2 113 137 IPR003591 -
Gso17g0628 393 SMART LRR_typ_2 161 185 IPR003591 -
Gso17g0628 393 SMART LRR_typ_2 90 112 IPR003591 -
Gso17g0628 393 SUPERFAMILY Nucleic acid-binding proteins 319 389 IPR012340 -
Gso17g0628 393 TIGRFAM eIF_5A: translation elongation factor IF5A 268 387 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Gso17g0628 393 Gene3D - 262 317 IPR014722 -
Gso17g0628 393 SUPERFAMILY Translation proteins SH3-like domain 270 326 IPR008991 -
Gso17g0628 393 Gene3D Ribonuclease Inhibitor 31 182 IPR032675 -
Gso17g0628 393 ProSiteProfiles Leucine-rich repeat profile. 212 234 IPR001611 GO:0005515
Gso17g0628 393 Gene3D - 319 392 IPR012340 -
Gso17g0628 393 Pfam Leucine rich repeat 187 245 IPR001611 GO:0005515
Gso17g0628 393 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515
Gso17g0628 393 Gene3D Ribonuclease Inhibitor 183 256 IPR032675 -
Gso17g0628 393 PANTHER OS06G0301201 PROTEIN 1 279 - -
Gso17g0628 393 SMART eIF_5a_2 318 387 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Gso17g0628 393 SUPERFAMILY L domain-like 48 274 - -
Gso17g0628 393 CDD S1_eIF5A 319 389 - -
Gso17g0628 393 PRINTS Leucine-rich repeat signature 93 106 - -
Gso17g0628 393 PRINTS Leucine-rich repeat signature 113 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0628 Gso-Chr17 5809803 5815840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0628 268 392 Eukaryotic Initiation Factors Gene Family AT1G69410 84.800 5.04e-74 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0628 - - gmx:100797738 539.265