Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0627 ATGGCCCAGCGCCGCAGCCCCCAACCTCTCCCAGAGCCAGACACCAAAGGAAACAATTCCCACCAAAAACCGCAACACAACAAGGAAACAGAACGAGTCGCCGAATCGCCTTCCGCCGCCGAGTCGCAGCGTGGCGAGTTACGGAGCTCCGACGAGCCTCGTACGGAGTCCAATTTAGAAACCCTAGGCCATGGTGTTTCCTCATCGGTTGAAACCCTTGCTGTGCAGTCTCCGACTGACGATTTGCAAGGGAGCTCTACCGCACTTAATTCGGGTGCCAAAGCCGAAAGTAAGGAGACCGTTGGATCTCCTGAAAAGGAAATTATTGATAGAGGAGCAGTGCAGCCACTCCAAACTCAGACAGAAGATCGGCTTCAGGTGTCTGTGTGTTCAACTCCATTGTCTGATCTATCACCAACTTCTGTTACACAATCTTTATCAATTGTTTCTAGTCCAACCATACCGAAACAGAAAATATCTACTCCAAAGGTCAATAACGCACATGTGCCAGAAGTAGATAAGAAAAATCCTTCTGGTCGCAAAACCTTATCTTCTGTTTCTATTGCAAGGACATCAGCATCTGATGGATACAACTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACTCATTCAGATTGTTGTGCTAAGAAGATTGAATGCTGTGATGATTCAGGTCATGTGATAGAGATTGTATATAAAAGTGAGCACAGTCATGATCCTCCACGGAAGACTAATTCCATTAGGGAAAATAAGTTTCTGTCTTCCAGTGAACCCATTGTAGAAAACAGTGTTCCGGAGCAGCCTATCAAAGTTCTGAAGGATGCTGATCCATCCATTTCTTCAAAAGAATCTCTACAAGAAGCACCCTGCAGCACTGATAAGAAACGACAAAACACATCTAATATCAGTGGTAATGGTAAAGTTATTTTGAAAGAGGAACATGTAAATGAGCCAGTACCAAAAAAAAGAATGAAGAAAGGTGACTTAACAGACATGGATTCTCCAGTAAAACCTGGAAAAAAATCCAAGTTTGTTGTACATGCAGCAGGAGATGTGGGGATATCTGCTGATGGTTACCGATGGCGCAAGTATGGGCAGAAAATGGTGAAAGGAAATCCACATCCCAGGAACTACTACAGATGCACTTCTGCTGGATGTCCTGTCAGAAAGCACATTGAGACCGCTGTAGATAATTCAGATGCCGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCAGTGCCCAAGAAACGACATGGGCCACCAAGTGCTCCTCTTGTGGCTGCTGCAGCACCTGCCTCCTTGAACAGTTTGCAGGCGAAGAAATCCGATTCCCCACAAAACAAGAAAATTTCTACTCAATGGTCAGTGGACACCGAAGGAGAACTAACTGGGGAAGCACTGGAGCTTGGGGGTGAGAAAGCAATGGAGTCAGCTCGAACGCTTCTGAGCATAGGTTTTGAAATTAAGCCTTGCTGA 1518 0.4565 MAQRRSPQPLPEPDTKGNNSHQKPQHNKETERVAESPSAAESQRGELRSSDEPRTESNLETLGHGVSSSVETLAVQSPTDDLQGSSTALNSGAKAESKETVGSPEKEIIDRGAVQPLQTQTEDRLQVSVCSTPLSDLSPTSVTQSLSIVSSPTIPKQKISTPKVNNAHVPEVDKKNPSGRKTLSSVSIARTSASDGYNWRKYGQKQVKSPTGSRSYYRCTHSDCCAKKIECCDDSGHVIEIVYKSEHSHDPPRKTNSIRENKFLSSSEPIVENSVPEQPIKVLKDADPSISSKESLQEAPCSTDKKRQNTSNISGNGKVILKEEHVNEPVPKKRMKKGDLTDMDSPVKPGKKSKFVVHAAGDVGISADGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASLNSLQAKKSDSPQNKKISTQWSVDTEGELTGEALELGGEKAMESARTLLSIGFEIKPC* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0627 505 SMART WRKY_cls 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 SMART WRKY_cls 366 425 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 Gene3D WRKY domain 351 427 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 Gene3D WRKY domain 180 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 ProSiteProfiles WRKY domain profile. 361 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 MobiDBLite consensus disorder prediction 19 35 - -
Gso17g0627 505 MobiDBLite consensus disorder prediction 168 187 - -
Gso17g0627 505 Pfam WRKY DNA -binding domain 195 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 Pfam WRKY DNA -binding domain 368 423 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 MobiDBLite consensus disorder prediction 1 124 - -
Gso17g0627 505 MobiDBLite consensus disorder prediction 290 316 - -
Gso17g0627 505 MobiDBLite consensus disorder prediction 60 97 - -
Gso17g0627 505 MobiDBLite consensus disorder prediction 286 316 - -
Gso17g0627 505 SUPERFAMILY WRKY DNA-binding domain 190 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 503 IPR044810 GO:0003700
Gso17g0627 505 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 19 503 - -
Gso17g0627 505 SUPERFAMILY WRKY DNA-binding domain 362 426 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso17g0627 505 ProSiteProfiles WRKY domain profile. 194 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0627 Gso-Chr17 5794042 5801245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0627 128 505 WRKY Transcription Factor Family AT4G30935 57.180 9.89e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso17g0627 WRKY 1.9e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0627 - - gmx:100127377 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0627 17 5794042 5801245 Gso17g0627 17 5794042 5801245 ECH