Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0619 ATGATGACATTCCAAAGCAAGGCAGGTATCTTCTTCCTGTGCTTGTTAATCATTGCATTTTCATCCATTAATCTTGCTGTTGCTGTGCCAAAAGAGCAAGAGCAAGATCGAATCTTGGCGCTCCCGGGGCAGCCACGTGTGGCATTCTCTCAGTTCTCCGGTTATGTCACTGTGAACGAGCAACATGGCCGAGCACTCTTCTACTGGCTCACTGAATCCCCCACTTCCCCGCAGAATAAACCACTTGTTCTCTGGCTCAATGGAGGGCCGGGTTGCTCATCAGTAGCATACGGGGCATCAGAGGAAATTGGGCCGTTCCGTATAAACAAAACGGGCTCTTCTCTATATCTCAACAAATATGCATGGAACAAAGAAGCAAGTATTCTCTTTCTTGAATCTCCTGCTGGTGTTGGCTTCTCATACACAAATACCAGCTCTGATCTCAAAACTTCAGGGGACAAAAGGACAGCTCAGGATGCACTGGTTTTTCTAATTAGATGGATGTCAAGATTTCCTCAATATAAATATAGGGAGTTTTACATTGCTGGAGAGAGCTATGCAGGGCACTACGTCCCCCAGTTGGCTAAGAAAATTCATGATTATAATAAAAACAATCCTCAAATTATTAATCTCAAAGGGTTCATTGTGGGAAATGCTGTGACTGATAGCTACAATGATGGAATTGGAACTGTCACATATTGGTGGAGCCATTCTATGATATCTGATCAGTCATACAAATCTATCCTCAAATACTGCAATTTCACAGCAGAAGAAACATCTGGAAAATGTGATGATGTTTATAGTTATGCGGTTAACTATGAATTTGGAAATATAGACCAGTACAGCATCTATACGCCTACGTGCACAGCATCACAAAACAATACCGTTAGGCACATGCGATTCAAGAATCTTCATCTGATTTCTGGGTATGATCCGTGTACTGAAAATTATGCAGAGAAATACTATAACCTTCCAGAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGTGATGTGCTCCTGAAAAATTGGAAGGATTCTGCAATTTCAGTGTTGCCCATATACAAAGAGTTAATTGCCGCGGGATTAAAAATATGGGTTTTCAGTGGGGACACAGATTCTGTGGTTCCAGTTACTGCCACAAGGTTTTCTCTCAACCACCTTAACCTCAGCATCAGAACTCGCTGGTATCCATGGTACTCTGGTGGGCAGGTTGGTGGATGGACAGAGGTGTATGATGGACTAACTTTTGCAACAGTAAGAGGAGCTGGCCATGAAGTACCTTTATTTCAGCCAAAGCGAGCTTACATTCTTTTCAAGTCTTTTTTGGCAGCAAAGGAACTGCCAAAATATTGA 1383 0.4244 MMTFQSKAGIFFLCLLIIAFSSINLAVAVPKEQEQDRILALPGQPRVAFSQFSGYVTVNEQHGRALFYWLTESPTSPQNKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNKYAWNKEASILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALVFLIRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIHDYNKNNPQIINLKGFIVGNAVTDSYNDGIGTVTYWWSHSMISDQSYKSILKYCNFTAEETSGKCDDVYSYAVNYEFGNIDQYSIYTPTCTASQNNTVRHMRFKNLHLISGYDPCTENYAEKYYNLPEVQKAMHANVTNIPYKWTACSDVLLKNWKDSAISVLPIYKELIAAGLKIWVFSGDTDSVVPVTATRFSLNHLNLSIRTRWYPWYSGGQVGGWTEVYDGLTFATVRGAGHEVPLFQPKRAYILFKSFLAAKELPKY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0619 460 PANTHER SERINE CARBOXYPEPTIDASE 24 18 459 - -
Gso17g0619 460 Pfam Serine carboxypeptidase 43 453 IPR001563 GO:0004185|GO:0006508
Gso17g0619 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Gso17g0619 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 459 IPR001563 GO:0004185|GO:0006508
Gso17g0619 460 SUPERFAMILY alpha/beta-Hydrolases 33 455 IPR029058 -
Gso17g0619 460 Gene3D - 360 453 - -
Gso17g0619 460 Gene3D - 313 350 - -
Gso17g0619 460 Gene3D alpha/beta hydrolase 32 290 IPR029058 -
Gso17g0619 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Gso17g0619 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Gso17g0619 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Gso17g0619 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Gso17g0619 460 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0619 Gso-Chr17 5735590 5743115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0619 318 457 Calmodulin-binding Proteins AT2G22960 29.078 3.36e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0619 K16297 - gmx:100783242 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0619 17 5735590 5743115 Gso17g0619 17 5735590 5743115 ECH