Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso17g0616 | ATGGAGTTCAAATATCGTGATGGTCAAATCCGAAGGACACCATCACCATTACGGAGCCCTCTTCCTTCCAACTCCTATGTCTCCAATCGCCCATTACATGGGTGTGACTTTGCATCAGGTGGCTTTCCTAGCAATGTTTCAGCGCCTAGAGTTTTCCCAATGATCATGCCGATCAATGTCAACGGAGTATTCCAACGAGAGTTGGAGAAAGAGAAAATATGGCGAGAGCTAGAGAAGGAAAAAATCAGGAGAGAAATCATTGCTCGTGAGATGGCTTTTGCACAACGACGAGAGTTGGAAGACGAAGTGAGAAAGGAAATGGAATTAGAGAGAACATTCAGAATCCCGATGCAAAGATCAGAGGGGATTGCATTTCGAGAACCAATTTCAGAGTCTATTAATCATAGTCGGTTGAATAACATTACCATGTTTGGTGGGCTACCATTCCATTTATCGTCCCAAGCTTCTAAGCAAATTCACACGGATAATATCCAATTTGATAACAAAGAAGCTTCTAATAGCAAGGATAAAGTGATTATATTGAATAAGCCAGATGATCATTGTGGAGAAAAGCGCAAAGCAGTAACACTTGCAATTGATGACAATGAGAGTCTACAGAAGAAAGTCAAGAAGGAGTGGACTTGCGAGTTGTGTCAAATTTCTACAACAAGTGAGAAAGGCTTGAATGATCATATTCAAGGGAAAAAACATAAGGCTAACAAAGAATCCACTAGAACTCAAAAAATAGGGCTGGATTCAAGATCAGAAAGAGAAACACTTCATCCTTGTTTAACACCCGCGAACGATCAAAATGAAACAACTACTATTAAACAAGCACAGGAAACAAGCGCACCGTCAAAAGGGAAGAAATTTGAATTTTGGTGTGAGCTTTGTCAAGTTCAAACTCATTCAGAAATTGTCACGCAAAGTCATAAGAATGGAAAAAAACACTTGAGAAATATGAAGAAATTGAATCACAACAATGATGGTGTTGCAAATCTTGGATAA | 1008 | 0.3938 | MEFKYRDGQIRRTPSPLRSPLPSNSYVSNRPLHGCDFASGGFPSNVSAPRVFPMIMPINVNGVFQRELEKEKIWRELEKEKIRREIIAREMAFAQRRELEDEVRKEMELERTFRIPMQRSEGIAFREPISESINHSRLNNITMFGGLPFHLSSQASKQIHTDNIQFDNKEASNSKDKVIILNKPDDHCGEKRKAVTLAIDDNESLQKKVKKEWTCELCQISTTSEKGLNDHIQGKKHKANKESTRTQKIGLDSRSERETLHPCLTPANDQNETTTIKQAQETSAPSKGKKFEFWCELCQVQTHSEIVTQSHKNGKKHLRNMKKLNHNNDGVANLG* | 336 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso17g0616 | 335 | Pfam | Zinc-finger of C2H2 type | 213 | 237 | - | - | |
| Gso17g0616 | 335 | Pfam | Zinc-finger double-stranded RNA-binding | 293 | 317 | IPR022755 | - | |
| Gso17g0616 | 335 | Gene3D | Classic Zinc Finger | 272 | 324 | - | - | |
| Gso17g0616 | 335 | Gene3D | Classic Zinc Finger | 196 | 243 | - | - | |
| Gso17g0616 | 335 | MobiDBLite | consensus disorder prediction | 309 | 335 | - | - | |
| Gso17g0616 | 335 | MobiDBLite | consensus disorder prediction | 264 | 284 | - | - | |
| Gso17g0616 | 335 | SUPERFAMILY | beta-beta-alpha zinc fingers | 202 | 244 | IPR036236 | - | |
| Gso17g0616 | 335 | PANTHER | OS06G0651300 PROTEIN-RELATED | 1 | 326 | - | - | |
| Gso17g0616 | 335 | SUPERFAMILY | beta-beta-alpha zinc fingers | 284 | 324 | IPR036236 | - | |
| Gso17g0616 | 335 | PANTHER | OS06G0651300 PROTEIN | 1 | 326 | - | - | |
| Gso17g0616 | 335 | SMART | ZnF_U1_5 | 210 | 244 | IPR003604 | GO:0003676|GO:0008270 | |
| Gso17g0616 | 335 | SMART | ZnF_U1_5 | 290 | 324 | IPR003604 | GO:0003676|GO:0008270 | |
| Gso17g0616 | 335 | MobiDBLite | consensus disorder prediction | 261 | 284 | - | - | |
| Gso17g0616 | 335 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso17g0616 | Gso-Chr17 | 5712283 | 5713840 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso17g0616 | 212 | 317 | C2H2 Transcription Factor Family | AT2G19380 | 28.302 | 1.28e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso17g0616 | - | - | gsj:114392332 | 565.074 |