Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0605 ATGTTGTTGTTTACAATCTTCAGATTAACAGTGTTTCTAATTTTCTTCCTGGGCACTGTTCAATCTAGAGTACTTCATGGGAAAGAAAATGCTGGCATAGTGAATGGAAAAAAATCACTTATTTCATTCATGTCAGGCATTGTTTCTGACCCTCAAAACGCTCTAGAGAGTTGGAAGTCACCGGGTGTTCATGTTTGTGATTGGTCAGGTGTAAGATGCAACAATGCAAGTGACATGATCATAGAGCTTGATCTCAGTGGAAGCTCACTAGGAGGCACTATTTCCCCTGCTCTTGCTAACATCTCTTCCTTGCAAATTCTTGATCTTTCTGGAAACTGTCTGGTGGGTCACATTCCAAAGGAATTAGGCTATTTGGTTCAGCTTAGACAACTCAGTTTGTCTGGGAATTTTCTTCAAGGGCACATTCCATCCGAGTTTGGTTCACTTCATAACTTGTACTACCTTGACTTGGGAAGTAATCATCTTGAGGGAGAGATTCCCCCATCTCTTTTCTGTAATGGGACTTCACTGAGTTATGTAGACCTATCTAACAATTCCTTAGGGGGACAAATCCCCTTCAATAAAGGGTGTATCCTTAAAGACCTCAGGTTCCTATTACTTTGGTCTAACAAGCTAGTAGGCCAAGTTCCTTTAGCTCTTGCAAACTCTACCAGGCTTAAATGGCTTGATTTGGAGTTGAATATGTTGAGTGGAGAGCTTCCTTCTAAGATTGTAAGTAATTGGCCACAACTACAATTCCTTTACTTGTCATACAACAATTTTACTAGCCATGATGGTAATACCAACCTTGAACCTTTCTTTGCCTCCTTGGTGAATTTATCTCACTTTCAAGAACTCGAATTGGCGGGAAACAATCTTGGTGGGAAGCTGCCTCATAACATTGGTGATCTAATTCCCACCAGCCTCCAACAACTTCACCTAGAAAAAAATCTCATATATGGCTCTATACCTTCACAAATTGGCAACCTTGTCAACCTGACTTTCTTAAAGTTGTCCAGTAACCTAATAAATGGATCAATCCCTCCCAGCCTCAGCAACATGAATAGGCTAGAAAGAATTTATTTGTCAAATAATTCACTATCAGGTGAGATTCCTTCAACCCTTGGTGCTATCAAGCATCTGGGACTTCTAGACTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCAAATCTATCCCAGTTAAGAAGGTTTTTACTTTATGACAACCAGCTTTCTGGAACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTAGACTTATCTCACAACAAGATAACGGGGTTGATTCCTGAAGAAGTTGCAGACTTGAGTGGCTTGAAACTATACTTGAATTTGTCAAACAATAACTTACATGGTTCTTTGCCATTAGAACTCAGCAAAATGGACATGGTGCTAGCTATTGATGTATCCATGAATAACCTCTCTGGCAGCATCCCTCCACAACTGGAAAGCTGCACAGCACTGGAGTACCTCAACCTCTCTGGTAATTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCAAATTGCTCTATATTAGATCACTTGATGTGTCTTCCAATCAATTGACTGGGAAAATACCAGAGTCCATGCAGTTGTCTTCCTCTCTCAAGGAACTTAATTTCTCTTTCAACAAATTCTCAGGGAAAGTCTCAAACAAGGGAGCATTTTCAAATCTTACCGTTGACTCTTTCCTTGGAAATGATGGTCTCTGTGGCTGGTCTAAAGGCATGCAACATTGTCACAAGAAACGTGGTTATCATTTGGTGTTCTTGTTGATTCCTGTGTTACTATTTGGCACCCCTCTCCTATGCATGCCTTTTAGGTACTTCATGGTAACGATCAAGTCAAAATTGAGAAATCGAATTGCTGTTGTTAGAAGAGGTGATTTGGAGGATGTAGAAGAGGGAACAAAAGACCACAAGTACCCAAGAATTTCATATAAACAACTTAGAGAAGCCACTGGAGGCTTCACTGCTTCAAGCTTAATTGGTTCAGGCCGGTTTGGACAGGTCTACGAAGGAATGCTTCAAGATAATACAAGAGTAGCTGTGAAGGTGTTGGATACAACACATGGTGAGATTTCAAGGAGCTTTAGAAGGGAATATCAGATCCTGAAAAAGATAAGGCACAGAAATTTAATAAGGATCATCACAATTTGTTGTAGACCAGAATTTAATGCCCTTGTTTTTCCCTTGATGCCAAATGGTAGCCTTGAGAAACATCTATATCCAAGCCAAAGATTGAATGTGGTTCAATTGGTAAGAATCTGCAGTGATGTAGCTGAGGGAATGTCCTATCTGCACCATTACTCTCCAGTGAAAGTAGTGCATTGTGATCTTAAGCCAAGCAATATACTCCTTGATGAAGATATGACAGCTTTGGTTACTGATTTTGGAATTTCAAGGCTTGTACTAAGTGATGAGAATACATCCACCAGTGACTCAGCATCTTTCAGTTCAACACATGGTTTGTTATGTGGCTCAGTTGGTTACATAGCTCCTGAATACGGAATGGGAAAACATGTTTCAACTGAGGGTGATGTTTACAGTTTTGGAGTACTTGTGTTGGAGATGGTCTCAGGTAGACGCCCCACAGATGTACTCAGCCATGAAGGCTCAAGCTTGTGTGACTGGATTAAAAAACAATACACACACCAACACCAACTTGAAAACTTTGTTGAACAAGCACTGCATAGGTTCTCTCATTGTGGCGTGCCAAACCATCGTGTTAAAATTTGGAAAGATGCTATACTTGAACTCGTCGAGGTGGGGCTAGTATGCACACAGTACAATCCTTCAACAAGACCAACCATGCACGATATAGCCCAAGAGATGGAAAGGTTGAAGGACAACCTCACTAAGTCAAACTTGCCCCCTCATCAATAG 2928 0.4074 MLLFTIFRLTVFLIFFLGTVQSRVLHGKENAGIVNGKKSLISFMSGIVSDPQNALESWKSPGVHVCDWSGVRCNNASDMIIELDLSGSSLGGTISPALANISSLQILDLSGNCLVGHIPKELGYLVQLRQLSLSGNFLQGHIPSEFGSLHNLYYLDLGSNHLEGEIPPSLFCNGTSLSYVDLSNNSLGGQIPFNKGCILKDLRFLLLWSNKLVGQVPLALANSTRLKWLDLELNMLSGELPSKIVSNWPQLQFLYLSYNNFTSHDGNTNLEPFFASLVNLSHFQELELAGNNLGGKLPHNIGDLIPTSLQQLHLEKNLIYGSIPSQIGNLVNLTFLKLSSNLINGSIPPSLSNMNRLERIYLSNNSLSGEIPSTLGAIKHLGLLDLSRNKLSGSIPDSFANLSQLRRFLLYDNQLSGTIPPSLGKCVNLEILDLSHNKITGLIPEEVADLSGLKLYLNLSNNNLHGSLPLELSKMDMVLAIDVSMNNLSGSIPPQLESCTALEYLNLSGNSFEGPLPYSLGKLLYIRSLDVSSNQLTGKIPESMQLSSSLKELNFSFNKFSGKVSNKGAFSNLTVDSFLGNDGLCGWSKGMQHCHKKRGYHLVFLLIPVLLFGTPLLCMPFRYFMVTIKSKLRNRIAVVRRGDLEDVEEGTKDHKYPRISYKQLREATGGFTASSLIGSGRFGQVYEGMLQDNTRVAVKVLDTTHGEISRSFRREYQILKKIRHRNLIRIITICCRPEFNALVFPLMPNGSLEKHLYPSQRLNVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDEDMTALVTDFGISRLVLSDENTSTSDSASFSSTHGLLCGSVGYIAPEYGMGKHVSTEGDVYSFGVLVLEMVSGRRPTDVLSHEGSSLCDWIKKQYTHQHQLENFVEQALHRFSHCGVPNHRVKIWKDAILELVEVGLVCTQYNPSTRPTMHDIAQEMERLKDNLTKSNLPPHQ* 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0605 975 Gene3D Phosphorylase Kinase; domain 1 650 745 - -
Gso17g0605 975 CDD STKc_IRAK 677 962 - -
Gso17g0605 975 Pfam Leucine Rich Repeat 103 121 IPR001611 GO:0005515
Gso17g0605 975 Pfam Leucine Rich Repeat 428 446 IPR001611 GO:0005515
Gso17g0605 975 Pfam Leucine Rich Repeat 502 523 IPR001611 GO:0005515
Gso17g0605 975 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515
Gso17g0605 975 ProSiteProfiles Leucine-rich repeat profile. 428 449 IPR001611 GO:0005515
Gso17g0605 975 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Gso17g0605 975 Gene3D Ribonuclease Inhibitor 35 196 IPR032675 -
Gso17g0605 975 SUPERFAMILY L domain-like 45 264 - -
Gso17g0605 975 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515
Gso17g0605 975 SUPERFAMILY Protein kinase-like (PK-like) 653 959 IPR011009 -
Gso17g0605 975 SUPERFAMILY L domain-like 336 587 - -
Gso17g0605 975 ProSiteProfiles Protein kinase domain profile. 671 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0605 975 SUPERFAMILY RNI-like 267 372 - -
Gso17g0605 975 Pfam Protein tyrosine and serine/threonine kinase 674 958 IPR001245 GO:0004672|GO:0006468
Gso17g0605 975 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 26 963 - -
Gso17g0605 975 SMART serkin_6 671 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0605 975 Gene3D Ribonuclease Inhibitor 264 601 IPR032675 -
Gso17g0605 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Gso17g0605 975 Gene3D Ribonuclease Inhibitor 197 263 IPR032675 -
Gso17g0605 975 SMART LRR_typ_2 125 148 IPR003591 -
Gso17g0605 975 SMART LRR_typ_2 280 304 IPR003591 -
Gso17g0605 975 SMART LRR_typ_2 101 123 IPR003591 -
Gso17g0605 975 SMART LRR_typ_2 378 401 IPR003591 -
Gso17g0605 975 SMART LRR_typ_2 402 426 IPR003591 -
Gso17g0605 975 SMART LRR_typ_2 330 354 IPR003591 -
Gso17g0605 975 SMART LRR_typ_2 427 449 IPR003591 -
Gso17g0605 975 SMART LRR_typ_2 149 173 IPR003591 -
Gso17g0605 975 PANTHER OS04G0122200 PROTEIN 26 963 - -
Gso17g0605 975 Pfam Leucine rich repeat N-terminal domain 38 74 IPR013210 -
Gso17g0605 975 Gene3D Transferase(Phosphotransferase) domain 1 747 971 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0605 Gso-Chr17 5625763 5629384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0605 38 969 Receptor kinase-like Gene Family AT5G20480 32.613 5.75e-154 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso17g0605 PK_Tyr_Ser-Thr 7.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0605 - - gmx:100793495 1921.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0605 17 5625763 5629384 Gso17g0605 17 5625763 5629384 ECH