Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0596 ATGGCCAAAAAATCACAGCTGCGTACCCAGAAAAACAATGTTACCACCAATGACGATAATAATCTTAACGTAACTAACACTGTGACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGACTCCCCACCTCAACGCAGCTCAATATACCGAGGAGTCACTAGGCACCGATGGACAGGCCGATACGAAGCTCATTTGTGGGACAAACATTGCTGGAATGAATCACAGAACAAAAAAGGGCGACAAGTCTACCTTGGCGCTTATGACAATGAAGAGGCAGCAGCACATGCTTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTACCTGAACGAACTGAAAGAAATGGAGGGTCAATCACGGGAGGAGTATATCGGATCGCTGAGGAGGAAAAGCAGTGGTTTTTCTCGGGGAATTTCTAAATACAGAGGTGTTGCAAGACATCATCATAACGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTACCTCGGAACTTATGCTACCCAAGAAGAAGCTGCTACTGCCTATGACCTGGCAGCCATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCTAACAACAACACCAACAACGTTATCGACGACCAGATTAGTATTAATCTCACTAACATAAACAATAATAATAATTGCACTAACAGCTTCACCCCAAGTCCTGATCAAGAACAAGAAGCTAGCTTCTTCCACAACAAAGATTCACTCAATAATACTATTGTAGAAGAAGTCACGTTGGTGCCACATCAGCCTCGTCCAGCGAGTGCCACGTCAGCATTGGAGCTTCTACTTCAGTCATCAAAGTTCAAGGAAATGATGGAGATGACATCTGTGGCCAATCTTTCATCAACACAGATGGAATCTGAGTTGCCACAGTGCACATTTCCTGATCACATTCAGACGTACTTTGAGTATGAAGATTCCAATAGATATGAGGAAGGAGATGATCTCATGTTCAAGTTCAACGAGTTCAGCTCCATTGTGCCGTTTTACCAATGTGACGAGTTCGAGAGTTGA 1113 0.4358 MAKKSQLRTQKNNVTTNDDNNLNVTNTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQVYLGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNNTNNVIDDQISINLTNINNNNNCTNSFTPSPDQEQEASFFHNKDSLNNTIVEEVTLVPHQPRPASATSALELLLQSSKFKEMMEMTSVANLSSTQMESELPQCTFPDHIQTYFEYEDSNRYEEGDDLMFKFNEFSSIVPFYQCDEFES* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0596 370 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 ProSiteProfiles AP2/ERF domain profile. 50 116 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 Pfam AP2 domain 151 202 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 Pfam AP2 domain 50 108 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 353 - -
Gso17g0596 370 SUPERFAMILY DNA-binding domain 49 118 IPR016177 GO:0003677
Gso17g0596 370 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 353 - -
Gso17g0596 370 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Gso17g0596 370 MobiDBLite consensus disorder prediction 1 26 - -
Gso17g0596 370 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 CDD AP2 49 118 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Gso17g0596 370 Gene3D AP2/ERF domain 50 118 IPR036955 GO:0003700|GO:0006355
Gso17g0596 370 SMART rav1_2 50 122 IPR001471 GO:0003700|GO:0006355
Gso17g0596 370 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0596 Gso-Chr17 5559215 5562271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0596 46 286 AP2-EREBP Transcription Factor Family AT5G57390 54.510 2.72e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gso17g0596 AP2 4.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0596 K09285 - gmx:100790871 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0596 17 5559215 5562271 Gso17g0596 17 5559215 5562271 ECH
Gso17g0596 17 5559215 5562271 Gso4g1292 4 34971995 34976340 PCT
Gso4g1292 4 34971995 34976340 Gso17g0596 17 5559215 5562271 PCT