Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0593 ATGATCATGCCTCTCTCCTGTCTCCTCCTCCTCCTCCTCTTCTTCCTCTCACGCCACACTCTCTCTTCCGCTTCTCAGCCTCGCAATCCCGAAGTGGAGGCTTTGATCAACATTAAAGGAGGTCTGAATGACCCTCACGGCGTCCTCAACAACTGGGATGAATACTCCGTCGACGCTTGCAGCTGGACCATGATCACTTGCTCTTCTGATTACCTTGTCATAGGCCTTGGAGCGCCTAGCCAATCTCTCTCCGGAACTTTATCTCCGGCTATCGAAAATCTAACAAATCTTCGACAAGTATTACTGCAGAACAACAATATCTCAGGCAATATACCACCGGAACTTGGAAACCTTCCCAAGCTTCAGACATTAGACCTTTCCAATAACCGTTTCTCGGGGCTCATTCCTGCATCTCTTAGTCAATTGAATAGTCTCCAGTACTTGAGGCTCAACAACAATAATTTGTCCGGATCCTTTCCCGTGTCACTGGCCAAAACCCCACAGCTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTCCCAGCCAGGTCATTCAATATTGTGGGGAACCCATTAGTTTGTGGAAGCAGCACTACTGAAGGTTGCTCTGGCTCAGCAACCCTCATGCCCATCTCTTTCTCGCAAGTGTCATCAGAAGGAAAACACAAGTCCAAAAGACTAGCAATAGCTTTTGGGGTCAGTCTTGGTTGTGCTTCTCTCATCCTTCTGCTTTTTGGGCTATTGTGGTATAGAAAGAAACGACAGCACGGAGTCATCCTTTATATCAGTGATTATAAGGAAGAGGGAGTTCTTAGCTTGGGAAATCTAAAAAAATTCACTTTCAGAGAGCTCCTACATGCCACGGATAATTTCAGCTCCAAGAATATACTTGGTGCTGGAGGCTTTGGCAATGTCTATAGGGGGAAGCTTGGAGATGGCACAATGGTGGCGGTGAAAAGGCTGAAAGATGTAAATGGTAGTGCTGGTGAATCACAGTTCCAAACTGAGTTGGAGATGATCAGCTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTTCTAGTGAGAAACTTTTGGTTTATCCTTATATGTCTAATGGTAGTGTGGCCTCCAGGCTTAGAGGAAAACCAGCTTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCCAGAGGTCTTCTGTATTTGCACGAGCAATGTGATCCAAAGATAATACACAGAGATGTTAAGGCTGCCAATGTGCTTCTGGATGACTATTGTGAGGCTGTTGTTGGAGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGATTCTCATGTCACCACTGCTGTCCGTGGCACTGTTGGACACATTGCACCAGAGTACCTTTCCACCGGCCAATCATCTGAGAAAACAGATGTCTTTGGATTTGGCATTCTCTTGTTGGAGCTCATAACCGGAATGACAGCACTCGAGTTTGGGAAAACGGTGAATCAAAAAGGTGCTATGCTAGAATGGGTTAGGAAAATACTACATGAAAAGAGGGTTGCAGTGTTGGTGGACAAAGAGCTTGGAGACAATTATGATAGAATAGAGGTGGGGGAGATGCTGCAAGTTGCTTTACTGTGTACTCAATATTTGACAGCCCACCGCCCTAAAATGTCCGAAGTGGTTCGAATGCTTGAAGGTGATGGGCTTGCTGAGAAGTGGGCATCATCACATAATTACGGTAATCAAGACATGAACTCCAGTCACAGTCACAGCAACAGCAACAATAGCAATACTTCATCCCGCCCTACCTCTGCTTCCAAACATGATGATGATGTTAATGACCGTTCCAGCATGCTTGGCATGACAATGGATGATGATGATGAACAGTCTTTGGAATCCTATGCCATGGAACTCTCTGGTCCTAGATAA 1935 0.4543 MIMPLSCLLLLLLFFLSRHTLSSASQPRNPEVEALINIKGGLNDPHGVLNNWDEYSVDACSWTMITCSSDYLVIGLGAPSQSLSGTLSPAIENLTNLRQVLLQNNNISGNIPPELGNLPKLQTLDLSNNRFSGLIPASLSQLNSLQYLRLNNNNLSGSFPVSLAKTPQLAFLDLSYNNLSGPLPKFPARSFNIVGNPLVCGSSTTEGCSGSATLMPISFSQVSSEGKHKSKRLAIAFGVSLGCASLILLLFGLLWYRKKRQHGVILYISDYKEEGVLSLGNLKKFTFRELLHATDNFSSKNILGAGGFGNVYRGKLGDGTMVAVKRLKDVNGSAGESQFQTELEMISLAVHRNLLRLIGYCATSSEKLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKILHEKRVAVLVDKELGDNYDRIEVGEMLQVALLCTQYLTAHRPKMSEVVRMLEGDGLAEKWASSHNYGNQDMNSSHSHSNSNNSNTSSRPTSASKHDDDVNDRSSMLGMTMDDDDEQSLESYAMELSGPR* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0593 644 Pfam Leucine rich repeat 119 179 IPR001611 GO:0005515
Gso17g0593 644 Gene3D Transferase(Phosphotransferase) domain 1 374 584 - -
Gso17g0593 644 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Gso17g0593 644 Gene3D Phosphorylase Kinase; domain 1 267 373 - -
Gso17g0593 644 MobiDBLite consensus disorder prediction 577 644 - -
Gso17g0593 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Gso17g0593 644 SUPERFAMILY L domain-like 28 196 - -
Gso17g0593 644 PRINTS Leucine-rich repeat signature 121 134 - -
Gso17g0593 644 PRINTS Leucine-rich repeat signature 166 179 - -
Gso17g0593 644 ProSiteProfiles Leucine-rich repeat profile. 120 141 IPR001611 GO:0005515
Gso17g0593 644 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Gso17g0593 644 SUPERFAMILY Protein kinase-like (PK-like) 279 567 IPR011009 -
Gso17g0593 644 SMART LRR_typ_2 94 117 IPR003591 -
Gso17g0593 644 SMART LRR_typ_2 118 141 IPR003591 -
Gso17g0593 644 SMART LRR_typ_2 142 165 IPR003591 -
Gso17g0593 644 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 644 - -
Gso17g0593 644 MobiDBLite consensus disorder prediction 577 605 - -
Gso17g0593 644 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Gso17g0593 644 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 644 - -
Gso17g0593 644 Pfam Protein kinase domain 298 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0593 644 SMART serkin_6 297 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0593 644 ProSiteProfiles Protein kinase domain profile. 297 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0593 Gso-Chr17 5517191 5522625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0593 1 512 Receptor kinase-like Gene Family AT2G23950 76.367 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gso17g0593 Pkinase 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0593 - - gmx:100775565 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0593 17 5517191 5522625 Gso17g0593 17 5517191 5522625 ECH