Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0576 ATGGGTCATAGGCCACCAGAACAGCCACCATATTTTCTCTCAGAGCCAAACCCACCATTCCCACCCACTACTACTGTTCGATCTGATAGTTTCAGTTTGAACGATAGGGCCTTGAAGGTTAGTCCAAGCATCCTTCTGATCATCATAATTCTGGCTATTGTTTTCTTCATTTCTGGTTTGCTGCACCTTCTTGTTAGATTCCTGTGGAGACCCCAAACTAGAGAGCCTGATGAATTGGACAATGTCACCGCTCTCCAAGGCCAATTGCAGCAACTCTTTCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACACTCCCTGTGTTCCTCTACAAGGCCATCATAGGGCTCAAGAAGTACCCTTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTAAGGTTGCTACCAAAATGTAGCCACGCTTTTCACATGGAGTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGATCAATTCTCTGCAACCAACGCATGTTCTCCTATTGTTCTTGTCCTTGAATCTGGGAGTAGTGAGAGCTCCAGGGAAATCGTTCCCGAAAGAGTGGGTGCTTCTGCTGCTGTTGGAAGGACTAGTTCGGTTATGACCACAGATTCTCGCCTTGGTTGCCGTGGAGATAGTGAATTTGGATCGACCCGTGTGGATTTGATGAAATCAGGTGAGTTGTTAAGTGAAATTCCTGATCCAACAGTGCCGAATGGTGTGGAAAAAGTTGTTACTGTGAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGAGGTGAAGGTGGGGAAGGGAGTAGTAGTAGTACTAGTACCAACAACGTGGATGCTAGAAGGTGTTTCTCTATGGGGTCTTTTGCTTATGTCATGGATGAGAGTTCTTCATTGCAAGTACCTATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACACCAGGGCACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTGCAGGGTTTGATGCAACAACTATTATAGTTGAGGATGATGCTACTACTAGTACTGGGGCTACAACTTCAAGCACAACTTGTAATGGGAACAGTGCTGCTGCCATTGGAAGGAGCAGAAAGGAGAGCTTTTCTATATCAAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATTCTGTGGCGGATTCGTCTAGAAGGGCTGTTTCGTTTCGATTCCCGGCGAAGTCGAGTGTTGTTACTGCTGCTTCTGGTAGTGCTCATGATGATGATGATGATGACTTGAAGGGCAAGAATTGCAAGTTTGATACAAGGAGTACTATTTCTGAGATGGATATTGGGAAGTGGGAAAATGGAGGAGGGAGTGAGTTCGATTATGATGACGAAAACCAGAGTTGTTATAGTCTAGATTCTTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACAGGAGGAAGACAGAATAAGGTTGTTCACTCTGCTTCCAACCTCTAG 1569 0.457 MGHRPPEQPPYFLSEPNPPFPPTTTVRSDSFSLNDRALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDELDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKKYPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDQFSATNACSPIVLVLESGSSESSREIVPERVGASAAVGRTSSVMTTDSRLGCRGDSEFGSTRVDLMKSGELLSEIPDPTVPNGVEKVVTVKLGKFRSVDGGGEGGEGSSSSTSTNNVDARRCFSMGSFAYVMDESSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFAGFDATTIIVEDDATTSTGATTSSTTCNGNSAAAIGRSRKESFSISKIWLRGKKDKPNSVADSSRRAVSFRFPAKSSVVTAASGSAHDDDDDDLKGKNCKFDTRSTISEMDIGKWENGGGSEFDYDDENQSCYSLDSSQARAPSFARRTLLWLTGGRQNKVVHSASNL* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0576 522 MobiDBLite consensus disorder prediction 1 25 - -
Gso17g0576 522 SUPERFAMILY RING/U-box 104 174 - -
Gso17g0576 522 SMART ring_2 126 167 IPR001841 -
Gso17g0576 522 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 8 425 - -
Gso17g0576 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 173 IPR013083 -
Gso17g0576 522 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 425 - -
Gso17g0576 522 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g0576 522 CDD RING-H2_PA-TM-RING 125 168 - -
Gso17g0576 522 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Gso17g0576 522 MobiDBLite consensus disorder prediction 319 342 - -
Gso17g0576 522 Pfam Ring finger domain 125 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0576 Gso-Chr17 5333974 5336301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0576 32 522 C3H Transcription Factor Family AT2G18650 45.181 5.71e-103 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0576 - - gmx:100812651 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0652 13 20636825 20639190 Gso17g0576 17 5333974 5336301 GST