Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0575 ATGCCTTCTCCTTCAGATCACCACCGCCCCCAACCAAAACCTAATCCCAACCTCCTTTCTCTGTTCCTCAAACCAATCATCATGCTCCTTCTCACCTCCCTCTTCTTCCTCTTCCTCGGCTTCGCTGCCTTCCTCCTCCTCAACCTCTTCCTCCTCGGCGGCGCCTTCCACCGCCTTCGCTTCCGCCCCTCCGTTACCACCGCACCCACCTCCTCCAACGGCCTCCCCCCTCGCGAAATCAACAAGCTCCCCCGCTTTCGTGTCGCCAATGGATCCGAGACCCGACCCGACTCCAATTGCGTCGTCTGCCTGGACGCATTCCATAACGCCCAATGGTGCCGAAAGCTTGCTGCGTGCGGGCACGTGTTTCACCGCAGGTGCGTCGACACGTGGCTCCTTAAGGTCGCCGCATGCCCCACGTGCCGCACACCCGTGGGATTCAATGCCGGTGCTACGGTACATGACCCGCCTCAGCGGTCTGACCATTTTCATACCTGCGGAACTGACTCCAATGCTCTCACCACCCTTTTATAG 534 0.5955 MPSPSDHHRPQPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLGGAFHRLRFRPSVTTAPTSSNGLPPREINKLPRFRVANGSETRPDSNCVVCLDAFHNAQWCRKLAACGHVFHRRCVDTWLLKVAACPTCRTPVGFNAGATVHDPPQRSDHFHTCGTDSNALTTLL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0575 177 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 6 162 - -
Gso17g0575 177 Pfam Ring finger domain 99 142 IPR001841 -
Gso17g0575 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 148 IPR013083 -
Gso17g0575 177 SMART ring_2 100 141 IPR001841 -
Gso17g0575 177 SUPERFAMILY RING/U-box 93 148 - -
Gso17g0575 177 PANTHER RING-H2 FINGER PROTEIN ATL56 6 162 - -
Gso17g0575 177 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0575 Gso-Chr17 5327292 5328294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0575 13 176 C3H Transcription Factor Family AT2G18670 41.212 4.22e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0575 - - gmx:102664895 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0653 13 20649203 20650176 Gso17g0575 17 5327292 5328294 GST