Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0572 ATGCTATCAAGATCTTGCTTGGGGCTATTGAATTTGGTATCAGTGGATGATTACCACGCGCTGGCTAGTCGCGCTCCGCGGCTGGTGAATACGGCGGCCGGAGACTTGCCGGAGTTAGACATCGACGGCATGGAGAATTCAGGATCCGACGACGCCGTTGCGCCGGCGCCGCTCGAGCGGAGGATCGTGGTCGCGAATCAGTTACCGATACGCGCGTTTCGCGAGGGGAAGAAATGGAGGTTCGAGTGGGACAGAGACAGCCTCGTCCTTCAGCTCAAAGACGGATTTCCTTCCGACGTGGAAGTGTTGTACGTCGGTTCGCTTAAAGCAGAGATCGAACCCTGCAAACAAGAAGAAGTCGCTCAGTTACTCCTCGAAAAGTTCCGCTGCGTCCCAACGTTTATTCCTTCAGAAGTTCACAACAAATTCTACCATGGTTTTTGCAAGCATTACCTGTGGCCTCTTTTCCACTACATGCTACCCATGTCGCCGAGCCAAGGCGCGCGTTTCGACCGCGAGCAGTGGAAGGCTTACGTGCTCGCGAACAGGATCTTTGCCGACAAGGTCACCGAGGTTATCAACCCGGACGAGGATTATGTCTGGATTCACGATTACCACCTCATGATACTACCCACTTTCCTCCGGAAGCGGTTCCACCGCGTGAAGCTGGGGTTCTTCTTGCACAACACGTTTCCCTCCTCGGAGATATACCGGACTCTGCCCGTGCGCGAGGACATTCTCCGCGCGTTTTTGAACTGCGACTTGATTGGGTTCCATACATTCGACTATGCGCGCCATTTTTTGTCGTGTTGTAGTAGGATGTTGGGGCTGGATTACGAGTCCAAGAGGGGTTACATTGGTTTGGATTACTACGGTCGCACCGTGACGGTTAAGATCCTCCCCGCGGGAATTCACATGGGGCTCTTGGAGTCGGTGTTGTCGTTGCCGCAGACGGCGTTAAGGGTGAAAGAATTAAAGGAGGAGTATGAAGGAAAGATTGTGATATTGGGAGTGGATGACATGGACTTGTTCAAAGGTATTAGTTTAAAGTTCTTAGCTTTGGGTAAGCTTCTGGAAGTGGATGAGAGTTTACGGGGTCGTGTGGTGTTGGTTCAGATTCTGAACGCGGCGAGGAGCAAAGGGAAGGACATTCAGGACGTGAAGAACGAGAGCGAGGCCATTGCGAGGGAGATAAATGAGAAATATTCACAACCGGGTTACCAGCCCATTGTTTACATCAATGGACCAATCTCCACGCAGGAGAAGGCTGCGTATTACGCTGTTTCTGAGTGTTGCGTTGTGAATGCGGTGAGGGATGGGATGAATTTGGTGCCTTATGAGTACACTGTTTGTAGGCAGGGGAGTGTTGCGTTGGACAAGGCTCTTGGCGTTGAAGGTGAGGATAAGAAAGCTCCTAAGCAGAGCGTTATCATTGTGTCTGAGTTCATTGGGTGTTCCCCTTCGCTCAGTGGAGCCATCAGGGTGAATCCGTGGAACATTGATGATGTCGCTGAGGCTATGAATTCGGCTGTTACAATGTCGGAGGCAGAGAAGCATCTGCGCCACGAGAAGCATTACAAGTACATAAGCTCTCATGATGTGGCGTACTGGGCTAGGAGTTTTGATCAGGACTTAGATAGAGCTTGTAGGGAGCATTACTCTAAGAGGTATTGGGGTGTTGGATTGGGTTTGGGGTTTAGAATTGTTGCTTTGGATCCTACCTTTAGGAAGCTCTCTGTGGATCACATTGCCTCAGCATATAGAGATACACACAGTCGATTGATCCTTTTGGACTACGATGGCACAATGATGCCGCAGGCAACAATAAACAAGACTCCAAGCAGGGAAGTTATTGCTGTCTTGAATTATTTATGCAGTGATCCTGAAAACATGGTGTTCATTGTGAGCGGCAGGGATAAGGATTGCTTGGGCAAGTGGTTTTCTCCGTGTGAGAAATTGGGTCTCTCTGCTGAGCACGGTTACTTCACTAGGTGGAGCAAGGATTCTCCTTGGGAGACTTGCGGATTGGCGACTGATTTTGAATGGAAAATGATTGCCGAACCTGTGATGTCGCTTTATACAGAAGCAACTGATGGTTCCTTCATTGAACATAAGGAAAGCGCAATGGTTTGGCACCATCAAGAAGCGGATCCTTATTTTGGATCATGCCAAGCTAAAGAGCTTCTTGATCATCTGGAGAGTGTGCTTGCCAATGAGCCAGTAGTGGTTATAAGAGGACAACATATAGTTGAAGTTAAACCTCAGGGTGTGAGCAAGGGTAAAGTGGTGGAAGACCTTATCTCAATCATGCGAAGTAAGGGGAAGTCACCAGATTTTCTACTGTGCATAGGAGATGATCGCTCAGATGAAGATATGTTTGAAAGCATTGCTCGTTCAGCATCTAATCCAGCTCTTCCCACCATACCAAAAGTGTTTGCTTGCACTGTTGGACAGAAACCAAGTATGGCTGAATACTATTTGGATGATACTAGCGAAGTAATGAAGTTACTTGAAGGACTTGCAACCGCTTCAGCACCATCTGCGTCCATAGCTTCTCAGGAATTGTGA 2568 0.4887 MLSRSCLGLLNLVSVDDYHALASRAPRLVNTAAGDLPELDIDGMENSGSDDAVAPAPLERRIVVANQLPIRAFREGKKWRFEWDRDSLVLQLKDGFPSDVEVLYVGSLKAEIEPCKQEEVAQLLLEKFRCVPTFIPSEVHNKFYHGFCKHYLWPLFHYMLPMSPSQGARFDREQWKAYVLANRIFADKVTEVINPDEDYVWIHDYHLMILPTFLRKRFHRVKLGFFLHNTFPSSEIYRTLPVREDILRAFLNCDLIGFHTFDYARHFLSCCSRMLGLDYESKRGYIGLDYYGRTVTVKILPAGIHMGLLESVLSLPQTALRVKELKEEYEGKIVILGVDDMDLFKGISLKFLALGKLLEVDESLRGRVVLVQILNAARSKGKDIQDVKNESEAIAREINEKYSQPGYQPIVYINGPISTQEKAAYYAVSECCVVNAVRDGMNLVPYEYTVCRQGSVALDKALGVEGEDKKAPKQSVIIVSEFIGCSPSLSGAIRVNPWNIDDVAEAMNSAVTMSEAEKHLRHEKHYKYISSHDVAYWARSFDQDLDRACREHYSKRYWGVGLGLGFRIVALDPTFRKLSVDHIASAYRDTHSRLILLDYDGTMMPQATINKTPSREVIAVLNYLCSDPENMVFIVSGRDKDCLGKWFSPCEKLGLSAEHGYFTRWSKDSPWETCGLATDFEWKMIAEPVMSLYTEATDGSFIEHKESAMVWHHQEADPYFGSCQAKELLDHLESVLANEPVVVIRGQHIVEVKPQGVSKGKVVEDLISIMRSKGKSPDFLLCIGDDRSDEDMFESIARSASNPALPTIPKVFACTVGQKPSMAEYYLDDTSEVMKLLEGLATASAPSASIASQEL* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0572 855 TIGRFAM T6PP: trehalose-phosphatase 592 841 IPR003337 GO:0003824|GO:0005992
Gso17g0572 855 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Gso17g0572 855 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 11-RELATED 1 846 - -
Gso17g0572 855 SUPERFAMILY HAD-like 593 841 IPR036412 -
Gso17g0572 855 Gene3D - 592 701 IPR023214 -
Gso17g0572 855 Gene3D - 722 852 IPR023214 -
Gso17g0572 855 Pfam Glycosyltransferase family 20 60 546 IPR001830 GO:0003824|GO:0005992
Gso17g0572 855 Gene3D Glycogen Phosphorylase B; 312 530 - -
Gso17g0572 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 846 IPR001830 GO:0003824|GO:0005992
Gso17g0572 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 550 - -
Gso17g0572 855 CDD HAD_TPP 594 835 - -
Gso17g0572 855 Gene3D Glycogen Phosphorylase B; 55 311 - -
Gso17g0572 855 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 594 795 IPR006379 -
Gso17g0572 855 Pfam Trehalose-phosphatase 596 831 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0572 Gso-Chr17 5300590 5304119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0572 10 847 Trehalose Biosynthesis Gene Families AT2G18700 68.209 0.0 1189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0572 K16055 - gmx:100810498 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0655 13 20679239 20682592 Gso17g0572 17 5300590 5304119 GST