Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0565 ATGGCTAAGTGCTTTTCATTCTCTCTCTCTCGTTTTCTGATCTTTTCGTTTGTGCTGCTACAGACACAAACGGGGAATGGGTCAAATGCAACACCGATCAAGTTGAGAGTAGGGGTACCCAAGAAAGATGGTTTCCGCCAATTTGTGGATGTAGTACCTTCGGACTCTCATGAAAAAAAGTACAACGTATCTGGATATTGCATGGATGTTTTCAATGCCGTTGTTACCCGCTTACCTTTCAAGGTTTCTCTTCATATTCAACAACCTTATGGTATTGAATCAAGTGAGATTTCTGGAACATACGATGCACTTCTCCATCAGATCCCAGCAAAGTACGATGTTGTGGTAGGGGATGTAACAATTCTGGCGAACCGTTCAAATTTCGTAGATTTCACGCTGCCATATACAGGTTCGGGAGTTAAAATGTTAGTACCAGCTCAACATGGGAGGCAACAAGCCATGTGGATTTTCGTGAAACCATTCAGCTGGGAGCTTTGGTTGAGCATAGTCATCATCTCTACCTTCATAGGGTTTTCCATACTCATCATGGAAAGAAATGTAAATGCTCTTCCTGATCACGAGGGTTCGCCAAATCGAGCAAAGCTTAGCCCTGCAACCATCTTATGGTTTCCAATTTCACAAGCCATTCTTCCTGAAAGACAAGTAGTGGCGAAGAACTGCTCGAGATTTGTGTTGATGGTATGGCTTCTATTGGCGTTCGTGCTCATGCAAAGTTACACTGCAAACTTGACTTCTATATTGACTTTGGATCAGTTAAGACCCAGTTTTCTGAACGTAAATGATCTAAGAAAAGGGGGTTATTATGTTGGATATCAAACCGGGTCTTTCGTTAAAGATGTGCTGGTTCATCAATTTAATTTTGACTCGCACAAGCTGAGGGCATACAACACAAGTTCTGAGTATCATGATGCTTTAAAAATGGGAAGCGAAGGTGGGGGTGTTGCAGCTATATTCGACGAATTGCCCTACCTTAAAGTCTACCTTAGAGAATACGGATCCAATTACATCTTGTCGGGCCCAAGATATAGAAATGCTGGGTTTGGTTTTGCATTTCCTTTTAACTCCAATCTCACTGCTGACTTTTCGAGGGCCATCTTGAATGTGACTGAAAGTGATTTAATGAAAGAAATTGAGGAAAAATATTTTGGGAAGAATGATGATATTGGAGGAGAAGAGACGTCTACTGAAATTTCTTCTGCTACTCTAAGTCTCAACTTTCATAGTTTTGCAGGGTTATTCTTGATTACAGGGATTTCTACTTTATTAGCGCTATTGGTCTCAGAAACTGTTATTTGGCAAAGGGCGATTTTGATAGCCAAGGCATACAGTCAGAAGTTTTTGTTCTCCACTCCACCTTCCCCACAAACACGAGTTCATCCAACTCAAGATTCAACGCACGGATCAATAGAGGCCGTTTAA 1440 0.4146 MAKCFSFSLSRFLIFSFVLLQTQTGNGSNATPIKLRVGVPKKDGFRQFVDVVPSDSHEKKYNVSGYCMDVFNAVVTRLPFKVSLHIQQPYGIESSEISGTYDALLHQIPAKYDVVVGDVTILANRSNFVDFTLPYTGSGVKMLVPAQHGRQQAMWIFVKPFSWELWLSIVIISTFIGFSILIMERNVNALPDHEGSPNRAKLSPATILWFPISQAILPERQVVAKNCSRFVLMVWLLLAFVLMQSYTANLTSILTLDQLRPSFLNVNDLRKGGYYVGYQTGSFVKDVLVHQFNFDSHKLRAYNTSSEYHDALKMGSEGGGVAAIFDELPYLKVYLREYGSNYILSGPRYRNAGFGFAFPFNSNLTADFSRAILNVTESDLMKEIEEKYFGKNDDIGGEETSTEISSATLSLNFHSFAGLFLITGISTLLALLVSETVIWQRAILIAKAYSQKFLFSTPPSPQTRVHPTQDSTHGSIEAV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0565 479 Gene3D - 336 395 - -
Gso17g0565 479 MobiDBLite consensus disorder prediction 459 479 - -
Gso17g0565 479 Gene3D - 28 153 - -
Gso17g0565 479 CDD GluR_Plant 34 389 - -
Gso17g0565 479 PANTHER RECEPTOR 3.3, PUTATIVE-RELATED 1 478 - -
Gso17g0565 479 Pfam Bacterial extracellular solute-binding proteins, family 3 54 391 IPR001638 -
Gso17g0565 479 SMART GluR_14 34 391 IPR001320 GO:0015276|GO:0016020
Gso17g0565 479 Gene3D - 154 305 - -
Gso17g0565 479 Pfam Ligand-gated ion channel 392 425 IPR001320 GO:0015276|GO:0016020
Gso17g0565 479 SUPERFAMILY Periplasmic binding protein-like II 12 392 - -
Gso17g0565 479 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0565 Gso-Chr17 5215566 5217730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0565 34 473 Ion Channels AT5G11210 35.973 2.29e-91 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0565 K05387 - gmx:100807817 946.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso13g0660 13 20793477 20795546 Gso17g0565 17 5215566 5217730 GST