Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0562 ATGTGTGATTTGAGAGGACCAAAACCACTGTTGTATACTTTAAAAGAAAAAAATTCATTTGGACACAAGCTCCTTAAGTTGAGCACTTCATTATTCCGTAACAGTGTGCCAATTATGGGATCCTCCTTCAGTTGCTGCGGCTCAGAGAGGGTCGAAGAAGTGCCAACATCATTTGGCGTAGTTCACAATTCATGGAGAATATTCACATACAAGGAGTTGCACGCGGCTACCAACGGATTCAGTGATGATAATAAGCTTGGTGAAGGTGGTTTTGGAAGTGTCTATTGGGGAAGGACTAGTGATGGTCTTCAGATAGCGGTGAAGAAACTGAAAGCAATGAACTCAAAGGCAGAGATGGAATTTGCTGTGGAAGTTGAAGTTCTTGGAAGGGTTAGGCACAATAATTTGCTGGGTCTTAGGGGCTATTGTGTTGGGGATGATCAACGGCTCATAGTCTATGATTACATGCCAAATCTCAGCTTGCTTTCTCATCTCCATGGCCAGTTTGCTGTTGATGTTCAACTCAACTGGCAAAGGAGAATGAAGATTGCAATTGGCTCTGCGGAAGGTCTTCTGTACTTGCACCGTGAGGTGACACCCCACATTATCCACAGGGACATTAAAGCAAGTAATGTGCTTCTGAATTCAGACTTTGAGCCTCTAGTTGCGGATTTTGGGTTTGCAAAGCTAATCCCAGAAGGAGTTAGTCACATGACCACACGTGTGAAGGGTACATTGGGATATTTGGCACCCGAATATGCCATGTGGGGAAAAGTCTCCGAAAGCTGTGATGTCTATAGCTTTGGAATTCTTCTCTTAGAACTTGTAACCGGTAGAAAACCCATAGAGAAGCTCACGGGTGGGCTTAAGAGGACAATAACTGAATGGGCCGAGCCCCTAATAACCAACGGAAGGTTCAAGGACCTTGTTGATCCAAAACTCAGAGGGAATTTTGACGAAAACCAAGTCAAGCAAACAGTCAATGTGGCAGCTCTTTGTGTCCAAAGTGAGCCTGAGAAACGACCCAATATGAAGCAAGTGGTTAACCTTTTGAAAGGGTATGAATCTGAAGAGAAGAAGGTCACTACCATGAGGATAGATAGTGTCAAGTATAATGAAGAATTATTGGCACTTGATCAATCTAGTGATGATGATCATGATGATGCAACCGCTAGCTTTGGTGTTTTTAGTGCCATTGAAATCCAAAAGATGAAGGATCCATACAAGCAAAGTGATAACAAGATTATGGGCTAA 1254 0.4306 MCDLRGPKPLLYTLKEKNSFGHKLLKLSTSLFRNSVPIMGSSFSCCGSERVEEVPTSFGVVHNSWRIFTYKELHAATNGFSDDNKLGEGGFGSVYWGRTSDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHNNLLGLRGYCVGDDQRLIVYDYMPNLSLLSHLHGQFAVDVQLNWQRRMKIAIGSAEGLLYLHREVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLTGGLKRTITEWAEPLITNGRFKDLVDPKLRGNFDENQVKQTVNVAALCVQSEPEKRPNMKQVVNLLKGYESEEKKVTTMRIDSVKYNEELLALDQSSDDDHDDATASFGVFSAIEIQKMKDPYKQSDNKIMG* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0562 417 Pfam Protein tyrosine and serine/threonine kinase 83 351 IPR001245 GO:0004672|GO:0006468
Gso17g0562 417 Gene3D Transferase(Phosphotransferase) domain 1 156 377 - -
Gso17g0562 417 CDD STKc_IRAK 86 353 - -
Gso17g0562 417 ProSiteProfiles Protein kinase domain profile. 80 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0562 417 Gene3D Phosphorylase Kinase; domain 1 53 155 - -
Gso17g0562 417 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Gso17g0562 417 PANTHER OS01G0750732 PROTEIN 39 414 - -
Gso17g0562 417 SMART serkin_6 80 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0562 417 SUPERFAMILY Protein kinase-like (PK-like) 64 361 IPR011009 -
Gso17g0562 417 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 39 414 - -
Gso17g0562 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0562 Gso-Chr17 5180705 5182943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0562 34 383 Trihelix Transcription Factor Family AT1G70460 45.232 1.54e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gso17g0562 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0562 - - gsj:114393039 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0562 17 5180705 5182943 Gso17g0562 17 5180705 5182943 ECH
Gso13g0664 13 20852233 20854810 Gso17g0562 17 5180705 5182943 GST