Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0561 ATGGTACTTCCCTCCCCTGCCAAAATACTAGTTGGCCTCTCCTTAGACCCAGATGACAACAAGGAGCTTCTCTCATGGGCAATAAGAGTTTTAGCCAATCCAAATGACACCATTGTGGCTGTGCATGTTCTTGTTGTTGCGGACAAGAAGAAGCGTGTCTCGGTCAGAAGAAGGCAATCACAACTTAGGCAGGCAAAAGCTTATGTTATATCTGTGCTTGGAGAATTTGTACAATGCTGTTGGTCTAAGCAGGTTAATTTAGAGGCCAGGGTAGCACTCAATTCCTCAGTTGGTGAAGGTTTAGTGGAGGAAGCCAAGTCCATCAGTGCTGACTATCTTCTTATCCGTGGCTCGAGAAACCGAACAAATAAAATTGGAACTTCTAAAGGAATTACCAAGTATTGCTTTGAGCATGCACATGATGGGTGTACAATGGTCTCAGTTGGGAGACTTACAAAGGCAAATCAAAGTGCCAATTCAAACTCAACACGTTTTCAAGATAAAAGACAACCAAGTTCAAGATGGTTTAAGAAGGATAACCAATATGGCAAGGGTACCTCCCCTGTTCTAAAGGATTATATATCAGGAAGCAAGGCTCAGAACCGTTCACCAAGAACAGTACTAAATGGTCTAGAGGGACAATCGAACAGCACTGAAGATGATACCTTCAGCACTAGGGTCTCAAGCACCACGTATACCCCATCGTCATCGGATTCTAAGAGGCGATCCAAGATAAGAAAACCACAGTTCTCGTTCAGGTTCATAGCCTCATTCCTTGCTTCACCATTTAGAAGCAAAAACTTTAGCATATCCAAAAATGAAAAGCGTCAGCCTTTGTTGAAGTGCTTCAGCTATGAACAGATATCCAATGCTACCAAAGACTTCCACCGAGATAATTTGGTTGGACGAGGTGGGTACTCGGAAGTATACAAAGGTGATCTTTCAGATGGACGAAGCATTGCTGTGAAGAGGTTGGCCAAGGACAACAAGGATCCTAACAAGGAAAAAGAGTTTCTTATGGAGTTGGGTGTTATTGGACATGTCTGCCATCCCAATACTGCAACTTTAGTGGGCTGCTGCATTGAAAATGGGCTTTATCTGATTCTCAATTACTCTCAAAATGGAAATTTGGCTACTACACTCCATGGTAAAGCAGGAGATTCACTAGACTGGCCAATCAGATACAAAATTGCCATTGGTGTTGCAAGGGGTCTTCATTATCTTCACAAATGTTGTAAACACCGAATAATTCACCGTGACATTAAAGCCTCTAATGTTCTTCTGGGTCCTGATTATGAACCACAGATTACCGATTTTGGGCTTGCAAAGTGGCTTCCTAACAAGTGGACCCACCATGCTGTGATCCCCGTAGAGGGCACATTTGGATACTTAGCGCCAGAGTACTTTATGCATGGAATCGTGGATGAGAAAACAGATGTTTTTGCATTTGGAATCCTACTTTTGGAGATTGTAACTGGACGGAGACCTGTTGATTCATCGAAGCAAAACCTTCTCCTATGGGCAAAGCCTCTTATGGAATCAGGGAATATTGCTGAGCTAGCTGATCCAAGAATGGAAGGAAAATATGATGGAGAGCAACTGCATAGGGTAGTTCTAACGGCTTCATACTGTGTGAGACAAACTGCCACGTGGCGTCCCCCAATGAGTGAGGTATTAGAGCTGCTAACCAGTGGCCAAGAGAGTGAGATTGGAAAGGGCTGGAGGATCCCAAAGTTCATTTCTGAAGAATTGGATGATTACTCTATGGTTTTCGGATATGATGTACCCTCAGACATATCATTGGAGGATTATTTGTGA 1818 0.4323 MVLPSPAKILVGLSLDPDDNKELLSWAIRVLANPNDTIVAVHVLVVADKKKRVSVRRRQSQLRQAKAYVISVLGEFVQCCWSKQVNLEARVALNSSVGEGLVEEAKSISADYLLIRGSRNRTNKIGTSKGITKYCFEHAHDGCTMVSVGRLTKANQSANSNSTRFQDKRQPSSRWFKKDNQYGKGTSPVLKDYISGSKAQNRSPRTVLNGLEGQSNSTEDDTFSTRVSSTTYTPSSSDSKRRSKIRKPQFSFRFIASFLASPFRSKNFSISKNEKRQPLLKCFSYEQISNATKDFHRDNLVGRGGYSEVYKGDLSDGRSIAVKRLAKDNKDPNKEKEFLMELGVIGHVCHPNTATLVGCCIENGLYLILNYSQNGNLATTLHGKAGDSLDWPIRYKIAIGVARGLHYLHKCCKHRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPEYFMHGIVDEKTDVFAFGILLLEIVTGRRPVDSSKQNLLLWAKPLMESGNIAELADPRMEGKYDGEQLHRVVLTASYCVRQTATWRPPMSEVLELLTSGQESEIGKGWRIPKFISEELDDYSMVFGYDVPSDISLEDYL* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0561 605 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 122 - -
Gso17g0561 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Gso17g0561 605 MobiDBLite consensus disorder prediction 155 244 - -
Gso17g0561 605 Pfam Protein kinase domain 295 504 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0561 605 ProSiteProfiles Protein kinase domain profile. 295 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0561 605 MobiDBLite consensus disorder prediction 155 169 - -
Gso17g0561 605 SMART serkin_6 295 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0561 605 Gene3D Phosphorylase Kinase; domain 1 257 371 - -
Gso17g0561 605 SUPERFAMILY Protein kinase-like (PK-like) 270 562 IPR011009 -
Gso17g0561 605 PANTHER OS08G0249100 PROTEIN 6 595 - -
Gso17g0561 605 CDD USP_Like 8 140 - -
Gso17g0561 605 MobiDBLite consensus disorder prediction 193 238 - -
Gso17g0561 605 Gene3D HUPs 4 147 IPR014729 -
Gso17g0561 605 PANTHER OS08G0249100 PROTEIN 6 595 - -
Gso17g0561 605 Gene3D Transferase(Phosphotransferase) domain 1 373 573 - -
Gso17g0561 605 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Gso17g0561 605 Pfam Universal stress protein family 8 140 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0561 Gso-Chr17 5174600 5178383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0561 283 601 Trihelix Transcription Factor Family AT1G70460 40.059 1.43e-72 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso17g0561 Pkinase 3.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0561 - - gmx:100787158 1192.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0561 17 5174600 5178383 Gso17g0561 17 5174600 5178383 ECH
Gso13g0665 13 20857288 20861077 Gso17g0561 17 5174600 5178383 GST