Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0560 ATGGGAATTGAAAGAGGAGGCTTCAAGGGATTCAGGAGCGCCTGGAGCGTGCCGCCCAAGCCGTGCGATTCCTGCAAGCTGGCTTCGGCGGCGCTTTTCTGCCGCCCCGATTCCGCGTTTCTCTGCATCGCCTGCGATTCCAACATTCACTGCTCGAACAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTGCTGTCACGTGCAAGGCCGACGCCGCCGCCCTCTGCGTCACGTGTGACTCCGACATCCACTCCGCGAACCCCCTCGCGCAACGCCACGAGCGCGTCCCCGTGGAACCTTTCTTTGACTCCGCTGAGTCCATAGTGAAAGCCTCTGCTGCAGCCACCTTCGGGTTCATTGTCCCATCCGACGACGGCGGCGCCTCCGACGCTTTCGCCCCCGATGACTCCGACGCCGCCGCGTGGCTCATCCCGAACCCTAATTTCGGGTCCAAGCTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACAACAACAGCGCCGGAAACGACAGCGTCGTTCCAGTTCAAAAACCCTCTCTCGCCCCTCCCCTAATCAATAATCACCACCACCACCAATCAGAAACTTGCTTCGACGTCGATTTTTGTCGCTCGAAGCTCTCCTCCTTTAACTACCCTTCCAATTCTCTTAGCCAAAGCGTTTCGTCGTCGTCGCTTGATGTTGGAGTGGTGCCGGACGGGAACACGGTGTCAGACATGTCGTATTCTTTTGGTCGGAACAGTTCGGATTCGAGTGGGATTGTTGTTGTGTCAGGAAATAGTGTGGGGCAAGGTGCGACGCAGTTGTGTGGAATGGATCGGGAAGCGAGGGTACTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTCGAGAAGACAATTCGATACGCATCGCGAAAAGCATATGCGGAAACCCGGCCCAGGATAAAAGGCCGCTTCGCCAAACGAACAGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCCCTGCGGTGCTCATGCTGGACACTCCATACGGCGTCGTACCATCGTTTTAG 1125 0.5627 MGIERGGFKGFRSAWSVPPKPCDSCKLASAALFCRPDSAFLCIACDSNIHCSNKLASRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASAAATFGFIVPSDDGGASDAFAPDDSDAAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNNNSAGNDSVVPVQKPSLAPPLINNHHHHQSETCFDVDFCRSKLSSFNYPSNSLSQSVSSSSLDVGVVPDGNTVSDMSYSFGRNSSDSSGIVVVSGNSVGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGPAVLMLDTPYGVVPSF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0560 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 374 - -
Gso17g0560 374 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 374 IPR045281 GO:0009909
Gso17g0560 374 CDD Bbox1_BBX-like 65 107 - -
Gso17g0560 374 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Gso17g0560 374 SMART bboxneu5 17 64 IPR000315 GO:0008270
Gso17g0560 374 SMART bboxneu5 65 107 IPR000315 GO:0008270
Gso17g0560 374 Pfam CCT motif 302 344 IPR010402 GO:0005515
Gso17g0560 374 CDD Bbox1_BBX-like 21 64 - -
Gso17g0560 374 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Gso17g0560 374 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Gso17g0560 374 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0560 Gso-Chr17 5160432 5162236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0560 1 374 C2C2-CO-like Transcription Factor Family AT5G57660 55.208 1.96e-122 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso17g0560 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0560 - - gmx:100805693 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0560 17 5160432 5162236 Gso17g0560 17 5160432 5162236 ECH
Gso13g0666 13 20870727 20872528 Gso17g0560 17 5160432 5162236 GST