Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0556 ATGGGGCTTGTAAAAAAAATTGGGAAGTATCAGCTTGGTAGGACAATTGGAGAAGGTACATTCTCTAAGGTTAAGCTGGCTGTCAATGGCAACAATGGTCAGAAGGTTGCGATCAAGGTCATTGATAAGCATATGGTCCTGGAAAACAATCTTAAGAATCAGGTTAAAAGAGAGATCAGAACAATGAAACTTCTCCATCATCCAAATATAGTTAGAATTCACGAGGTTATTGGCACAAAAACGAAGATATACATTGTGATGGAATATGTTTCAGGAGGACAGCTATTCGACAAGATATCCTATGGAGAGAAGTTGAATGCATGTGAGGCAAGAAAACTATTCCAGCAACTTATTGATGCCCTGAAATACTGCCATAACAAAGGGGTTTATCATCGAGATCTCAAGCCAGAAAACTTGCTTCTTGACAGCAAGGGAAATCTCAAAGTGTCTGATTTTGGATTAAGTGCATTGCAAAAGCATAACGATGTCTTAAACACGCGGTGTGGATCCCCAGGCTATGTGGCACCTGAGCTGCTATTGAGCAAGGGGTATGATGGAGCAGCTGCTGATGTTTGGTCATGTGGGGTGATCCTTTTTGAATTACTTGCAGGCTATTTACCATTTAACGACCGGAACTTGATGAACTTATATGGAAAGATATGGAAGGCAGAATATAGATGTCCCCCATGGTTTACTCAGAATCAAAAGAAACTAATTGCCAAAATACTTGAACCACGTCCTGTAAAGCGGATAACTATACCAGATATTGTTGAAGATGAGTGGTTTCAGACTGACTACAAGCCTGTTTTTGCATCTGAATTTGATCAGAACATTAACTTGGATGATGTTGATGTTGCTTTCAATTCAATTAAGGAGAATATCAGAGAGTCAACGATACCCAAGTCCTCAAGTTTCATTAATGCGTTTCAACTAATAGCCATGTCTCAGGACCTTGATCTATCTGGCCTTTTTGAAGAACAGGATGAAAAAAAGCAGAGAACAAGGCTGGGATCCAAACACACTATCAATGAAACGATAGAAAAAATAGAAGCTGCCGCAACAGATGTAGGATTGTCAATAGAGAAAATGAACAACTTTAAGATAAAAATGCAACCAAAACATATAATGACTAGGTGTTCTAGATCATACCTATCAGCCCAGGTGATTGAAGTTGCTCCAACTCATTGTGTTATAGAAATATCAAAATCTACAGGAGATCTAAGAGTGTACCATAAATTTTGTGAAAGTTTATCAAATCTGCTGAAACAAAAACCTGATGTGCCATCACAAAGCCAAGATTCAGTAGATCTATGTGCCGCTGAAAGAAAAAAACAAGATGCTGGATGCTACGAAGAGCCAAAAAGTGAAGATAGCAAACCTCTTCCTGGCTATAAATCTGCTTGA 1404 0.3882 MGLVKKIGKYQLGRTIGEGTFSKVKLAVNGNNGQKVAIKVIDKHMVLENNLKNQVKREIRTMKLLHHPNIVRIHEVIGTKTKIYIVMEYVSGGQLFDKISYGEKLNACEARKLFQQLIDALKYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKHNDVLNTRCGSPGYVAPELLLSKGYDGAAADVWSCGVILFELLAGYLPFNDRNLMNLYGKIWKAEYRCPPWFTQNQKKLIAKILEPRPVKRITIPDIVEDEWFQTDYKPVFASEFDQNINLDDVDVAFNSIKENIRESTIPKSSSFINAFQLIAMSQDLDLSGLFEEQDEKKQRTRLGSKHTINETIEKIEAAATDVGLSIEKMNNFKIKMQPKHIMTRCSRSYLSAQVIEVAPTHCVIEISKSTGDLRVYHKFCESLSNLLKQKPDVPSQSQDSVDLCAAERKKQDAGCYEEPKSEDSKPLPGYKSA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0556 467 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 21-RELATED 6 426 - -
Gso17g0556 467 CDD CIPK_C 307 423 - -
Gso17g0556 467 PANTHER SERINE/THREONINE KINASE 6 426 - -
Gso17g0556 467 Pfam NAF domain 304 362 IPR004041 GO:0007165
Gso17g0556 467 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Gso17g0556 467 MobiDBLite consensus disorder prediction 443 467 - -
Gso17g0556 467 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0556 467 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0556 467 MobiDBLite consensus disorder prediction 443 459 - -
Gso17g0556 467 Gene3D Phosphorylase Kinase; domain 1 3 89 - -
Gso17g0556 467 Gene3D Transferase(Phosphotransferase) domain 1 90 288 - -
Gso17g0556 467 SUPERFAMILY Protein kinase-like (PK-like) 7 263 IPR011009 -
Gso17g0556 467 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Gso17g0556 467 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0556 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gso17g0556 467 Gene3D Kinase associated domain 1, KA1 301 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0556 Gso-Chr17 5119784 5123297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0556 6 417 CBL-interacting serine-threonine protein kinases AT1G01140 50.962 6.31e-151 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso17g0556 Pkinase 2.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0556 - - gmx:100786097 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0556 17 5119784 5123297 Gso17g0556 17 5119784 5123297 ECH