Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0554 ATGGGTAGAGCTCCATGCTGTGACAAGAACAACGTGAAGAAAGGACCATGGTCTCCTGAAGAGGATGCTACACTCAAAACCTATATTGAAAAGAATGGAACTGGTGGCAATTGGATTGCTCTTCCTCAGAAAATTGGGCTCAAGAGGTGTGGAAAGAGTTGCAGACTTAGGTGGTTAAATTACTTGAGACCTAATATCAAACATGGTGGATTTACTGAAGAAGAAGACAACATCATCTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATAATTGCTGCTCAGTTACCTGGAAGGACAGATAACGACATCAAGAACTATTGGAACACTAGATTGAAGAAGAAACTGCTCGGGAGGCGCAAACAATCTAACTTCAGCTCAAAAGACACAAACAATGGAATAGAGGAGAATTCTTATTCAAATGCCCTTAGTACTTCAGCTCTTGAAAGACTCCAACTGCACATGCAACTTCAAAGCCTCCAAAACCCTTTCTCTTTCTACAATAACCCTGCGCTGTGGCCTAAGTTGCATCCTATCCAAGAAAAGATGATCCATAGCCTACAATCTTTGAATGATGGCTCTAACCCTGTGATGCAAAATGCTTTGCCTAATTCCCCACATGATGAACAAGGACAAAAGGGTGAGTTTTACAAGCCTCAACATGATGGTGCAAAGATCAATAACCCTGATCAGGTTCATCTTTTGGAGAATATTCCTTTGAGTAACAGTGGAGTTCCCTTTGTTGCTTCTGGGAGTAGTACTAATCCAATGCACTCAAGTCTTGCACCAAGATCTGAGGCTATTCATGTGCAGACTAACAATAATGTGGGATTTCAGCAACTTGGTGCACTGCAAAATGAACTAGATGAGATTCTCAACAACAGAACAATGGGTTATGTGCCACAGGAAGATCATGATATGGCTTCAGGGTTTGATTGTTTCAGAGAGATGAATGACTCAAAGGATAGCTTGATTTGGTGGTCCAATGATTCTGATACCAAATCAGCATCCTCAAATTCCTGGGAATCATCTGCTACTCCGGCTCTTCTAACACAAGGGATGTTCCAAGATTATGAACTGGGTTACAGCCTGTAG 1098 0.4199 MGRAPCCDKNNVKKGPWSPEEDATLKTYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSNFSSKDTNNGIEENSYSNALSTSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPIQEKMIHSLQSLNDGSNPVMQNALPNSPHDEQGQKGEFYKPQHDGAKINNPDQVHLLENIPLSNSGVPFVASGSSTNPMHSSLAPRSEAIHVQTNNNVGFQQLGALQNELDEILNNRTMGYVPQEDHDMASGFDCFREMNDSKDSLIWWSNDSDTKSASSNSWESSATPALLTQGMFQDYELGYSL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0554 365 CDD SANT 71 113 IPR001005 -
Gso17g0554 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gso17g0554 365 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso17g0554 365 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gso17g0554 365 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso17g0554 365 CDD SANT 16 62 IPR001005 -
Gso17g0554 365 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso17g0554 365 PANTHER OS09G0431300 PROTEIN 1 322 - -
Gso17g0554 365 MobiDBLite consensus disorder prediction 193 208 - -
Gso17g0554 365 PANTHER OS09G0431300 PROTEIN 1 322 - -
Gso17g0554 365 Gene3D - 6 68 - -
Gso17g0554 365 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso17g0554 365 MobiDBLite consensus disorder prediction 193 227 - -
Gso17g0554 365 SMART sant 13 64 IPR001005 -
Gso17g0554 365 SMART sant 67 115 IPR001005 -
Gso17g0554 365 Gene3D - 70 142 - -
Gso17g0554 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0554 Gso-Chr17 5095851 5097709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0554 1 199 MYB Transcription Factor Family AT5G57620 74.272 1.37e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g0554 Myb_DNA-binding 9.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0554 K09422 - gmx:100783440 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0554 17 5095851 5097709 Gso17g0554 17 5095851 5097709 ECH
Gso13g0671 13 20921021 20922846 Gso17g0554 17 5095851 5097709 GST