LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g0553	ATGTGTAATAAAGGGTTTCAATGCTTGAGCCAGTGTGAGAGTGTAATTGATCATAGGCAAGGATTCATCATGGATAGTCCAATTCGATCGCCGGCCACCGGTTCAGGTTCCGGTTCCGGTGAAGATAACCGGCGTGTTAAGTTCTTGTGCAGCTTCCTGGGAAGCATAATGCCTCGCCCCCAAGATGGGAAGCTGCGTTATGTTGGCGGCGAGACGCGAATTGTTAGTGTTCCGAGGGATATTAGCTATGAGGAGTTGATGGGGAGGATGAGAGAGCTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCTCTTGTCTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAGGAGTATGACAAGTTAGGGTCAGGAGATGGATTCACTAGGCTCAGGATTTTTCTCTTTTCGCAATCCGAACAGGATGGTTCCTCTCATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAACGATGGTTCTAATTCTGACTTTAGGAGGTTGCAACAAGGTGAGTTTTCTATGATGAGTCCTGTTGAGGATATTCATGTGGCTGCTGATCAGTTCTATAATCCAATCAATGTGGAAAGTGGGATTCATAGTCAGAGAAGTGGGGACCTATCTATGTCGCCTTATAATATGCATCATCTCACTGTCCAGCACCCGCAAGCTTTAGGCCAGAGGTACAATGAAATGGATGCTCCTTGGAATCCTGCCTATTACTCTCCTAGGCATCATGGCCTCCATGACTTTCCATCTTCTCCTTCCGGTACAAGGTATCGCGTGCCATTTCCCGAGTTACCAGATAAGTGCATTGATAGAGTGCCGGAAGAGTATGCGCGACATCACGTAAATCATCATCCTGTGTACGACAATCAGCCGCAATATTCTGAAAATGTTATGTGGATGCCAGCACATGGCGAAAAGTCGGCTTTTCCAGGCAATATTATTCATAGTCCTCATGTTGTTGATGAGAACAGTATATGTGAGCAGTGTCGCATGGGTTTTCATAGAGGCCAACCACATCTGGAGCATTCTAATATAAGTAATGGAGTTCCACAGGTTGGTAATCTATGTGCAGAATGCCCCCCACCAAATAGGGATACTTTTGCTGCTGATGCAAAGTTACACTCGGCAATCTATCCCAATGAACCCAGTAATGATCATAGGTCTGTTTTTAATGATACTCAGAATCACGAGAGAGGATGGGGCTTGCAGCATCCAACTGCTCGAGTTGAGGAATCAAGAGTGCATGTCTCTCTTGGGCATGGTAGTGTGACTGATGCTCATAACTTGCCTTCCAATTATGTTCACCAGCAGGCTGGACCTGAATTGGGGACCGAACTGTTCCCTGAACAAACCGTGACTCCTGTACCTCCTATACAATTTCCTCCACTGGAAGATTGCAATGTGCGGTATGGAAATTCAGCTTCTCCTTATGGAGTAGATAGTAATTACGCTGTGCCGCGTGGACTTCCACCTGGTTTCTGGAGAAACACTCCAGTTCCTGTTCATATTGGACCATCTTATGAGGCTGCTACTTCACCTCAGCCGGTGAATGGTTTGATGAATGCAGCAGGATTAATCCGAGGAGAGGCCAGTCCAGGGTTTTTCATTGGACCAGATAGTCAAAATCATTGGGTTGATTCCTCACAGAAATTAACAGGACATGATGGTACAGCCATCCCAGAATATCCTTATGCACATGCTCTGAATCCATTGCCCCTTGGTCAAGAAAATCAACACCCGGTTATTGTAGATTTCATTCATCCCCCACAGGACATGAATGCTGGTACCTGCTTGAAACCCTTGCAGCTGCCAAAATCCTCTTTTAATATGGTTCCCAATCAACAGGTTTTAAGAGACGATACTCATTTGACTGAAGCAAAGAGTTTTGAATCTAATGGTTTGATTGGTGAAGGAATAGTGGTAAAAATTGAGGACAATGTTCAAAACCCTGGCACCCAGACTATATCTTTTTCAGTGCAAAATAAAATTGCTGAGAATGCATGCGAAGCTGCTGCTGCTTCTTCTGTTGAGTCTAACAATTTAAAGTCAAAACCTGAAGCAGACTGCGTGCATGTTGAGAAACTGGCTGATAAGGACCCTTCTGTTCCAGAAGATTCTAAACATTTAGTTGATCAATTCAGTTTCTTGCCTGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGATGCTGTGCAGTTGAAAGCTGCAGTCGATGAGCATGCTGATTCTCCGAATCACAATTCAGATACCAAAGATGAAACAACAAATGAAGTAGAACCAGCGAATGCTCATGGTGATTTAGAATTGGACTCTGAAAATGACCATGTAGATACTAATAAAATTGAGCCTACAAGGGCTGAGGAAGAAGCAATTGCTAAGGGATTACAGACTATTAAAAATGATGATTTGGAGGAGATCCGTGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGTTCCGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATCGCAGACTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCTCAACGGCCTATCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACCTTGCCTTGGATGGCTCCTGAACTTCTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTCTACTCATTCGGTATAGTCATGTGGGAATTACTCACAGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTACGTCCTCAAATCCCAACTTGGTGTGATCCTGAGTGGAAATCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTGTAGAAAGACCATCTTTTTCAGAAATTTCCAAGAAGCTGAGGAGTATGGCTGCTTCAATGAATTTGAAATAG	3291	0.4342	MCNKGFQCLSQCESVIDHRQGFIMDSPIRSPATGSGSGSGEDNRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDISYEELMGRMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDGSNSDFRRLQQGEFSMMSPVEDIHVAADQFYNPINVESGIHSQRSGDLSMSPYNMHHLTVQHPQALGQRYNEMDAPWNPAYYSPRHHGLHDFPSSPSGTRYRVPFPELPDKCIDRVPEEYARHHVNHHPVYDNQPQYSENVMWMPAHGEKSAFPGNIIHSPHVVDENSICEQCRMGFHRGQPHLEHSNISNGVPQVGNLCAECPPPNRDTFAADAKLHSAIYPNEPSNDHRSVFNDTQNHERGWGLQHPTARVEESRVHVSLGHGSVTDAHNLPSNYVHQQAGPELGTELFPEQTVTPVPPIQFPPLEDCNVRYGNSASPYGVDSNYAVPRGLPPGFWRNTPVPVHIGPSYEAATSPQPVNGLMNAAGLIRGEASPGFFIGPDSQNHWVDSSQKLTGHDGTAIPEYPYAHALNPLPLGQENQHPVIVDFIHPPQDMNAGTCLKPLQLPKSSFNMVPNQQVLRDDTHLTEAKSFESNGLIGEGIVVKIEDNVQNPGTQTISFSVQNKIAENACEAAAASSVESNNLKSKPEADCVHVEKLADKDPSVPEDSKHLVDQFSFLPELIASVKKAALEDAVQLKAAVDEHADSPNHNSDTKDETTNEVEPANAHGDLELDSENDHVDTNKIEPTRAEEEAIAKGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPICKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGNEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPVERPSFSEISKKLRSMAASMNLK*	1097

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g0553	1096	ProSitePatterns	Protein kinases ATP-binding region signature.	829	850	IPR017441	GO:0005524
	Gso17g0553	1096	Pfam	PB1 domain	61	146	IPR000270	GO:0005515
	Gso17g0553	1096	Pfam	Protein tyrosine and serine/threonine kinase	824	1086	IPR001245	GO:0004672\|GO:0006468
	Gso17g0553	1096	SMART	PB1_new	60	145	IPR000270	GO:0005515
	Gso17g0553	1096	Gene3D	Transferase(Phosphotransferase) domain 1	909	1095	-	-
	Gso17g0553	1096	CDD	PB1_UP2	49	145	-	-
	Gso17g0553	1096	Gene3D	-	64	148	-	-
	Gso17g0553	1096	PANTHER	-	22	1096	-	-
	Gso17g0553	1096	PRINTS	Tyrosine kinase catalytic domain signature	905	918	IPR001245	GO:0004672\|GO:0006468
	Gso17g0553	1096	PRINTS	Tyrosine kinase catalytic domain signature	942	960	IPR001245	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g0553	Gso-Chr17	5083745	5090042	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g0553	45	1096	MAP Kinase Kinase Kinase	AT5G57610	54.189	0.0	1018

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-6	Gso17g0553		PK_Tyr_Ser-Thr	2.8e-61	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g0553	-		-	gmx:100782903	2224.51

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso17g0553	17	5083745	5090042	Gso17g0553	17	5083745	5090042	ECH
	Gso13g0672	13	20929478	20936141	Gso17g0553	17	5083745	5090042	GST
	Gso17g0553	17	5083745	5090042	Gso15g1673	15	25572323	25583969	PCT
	Gso15g1673	15	25572323	25583969	Gso17g0553	17	5083745	5090042	PCT

Showing 1 to 4 of 4 entries