Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0553 ATGTGTAATAAAGGGTTTCAATGCTTGAGCCAGTGTGAGAGTGTAATTGATCATAGGCAAGGATTCATCATGGATAGTCCAATTCGATCGCCGGCCACCGGTTCAGGTTCCGGTTCCGGTGAAGATAACCGGCGTGTTAAGTTCTTGTGCAGCTTCCTGGGAAGCATAATGCCTCGCCCCCAAGATGGGAAGCTGCGTTATGTTGGCGGCGAGACGCGAATTGTTAGTGTTCCGAGGGATATTAGCTATGAGGAGTTGATGGGGAGGATGAGAGAGCTGTATGATGGGGCTGCTGTGTTGAAGTACCAGCAGCCTGATGAGGATCTTGATGCTCTTGTCTCTGTTGTCAATGATGATGATGTGGTTAACATGATGGAGGAGTATGACAAGTTAGGGTCAGGAGATGGATTCACTAGGCTCAGGATTTTTCTCTTTTCGCAATCCGAACAGGATGGTTCCTCTCATTTCATTGATGGGGATGATTCTGAGAGGAGGTATGTTGATGCATTGAATAGTTTAAACGATGGTTCTAATTCTGACTTTAGGAGGTTGCAACAAGGTGAGTTTTCTATGATGAGTCCTGTTGAGGATATTCATGTGGCTGCTGATCAGTTCTATAATCCAATCAATGTGGAAAGTGGGATTCATAGTCAGAGAAGTGGGGACCTATCTATGTCGCCTTATAATATGCATCATCTCACTGTCCAGCACCCGCAAGCTTTAGGCCAGAGGTACAATGAAATGGATGCTCCTTGGAATCCTGCCTATTACTCTCCTAGGCATCATGGCCTCCATGACTTTCCATCTTCTCCTTCCGGTACAAGGTATCGCGTGCCATTTCCCGAGTTACCAGATAAGTGCATTGATAGAGTGCCGGAAGAGTATGCGCGACATCACGTAAATCATCATCCTGTGTACGACAATCAGCCGCAATATTCTGAAAATGTTATGTGGATGCCAGCACATGGCGAAAAGTCGGCTTTTCCAGGCAATATTATTCATAGTCCTCATGTTGTTGATGAGAACAGTATATGTGAGCAGTGTCGCATGGGTTTTCATAGAGGCCAACCACATCTGGAGCATTCTAATATAAGTAATGGAGTTCCACAGGTTGGTAATCTATGTGCAGAATGCCCCCCACCAAATAGGGATACTTTTGCTGCTGATGCAAAGTTACACTCGGCAATCTATCCCAATGAACCCAGTAATGATCATAGGTCTGTTTTTAATGATACTCAGAATCACGAGAGAGGATGGGGCTTGCAGCATCCAACTGCTCGAGTTGAGGAATCAAGAGTGCATGTCTCTCTTGGGCATGGTAGTGTGACTGATGCTCATAACTTGCCTTCCAATTATGTTCACCAGCAGGCTGGACCTGAATTGGGGACCGAACTGTTCCCTGAACAAACCGTGACTCCTGTACCTCCTATACAATTTCCTCCACTGGAAGATTGCAATGTGCGGTATGGAAATTCAGCTTCTCCTTATGGAGTAGATAGTAATTACGCTGTGCCGCGTGGACTTCCACCTGGTTTCTGGAGAAACACTCCAGTTCCTGTTCATATTGGACCATCTTATGAGGCTGCTACTTCACCTCAGCCGGTGAATGGTTTGATGAATGCAGCAGGATTAATCCGAGGAGAGGCCAGTCCAGGGTTTTTCATTGGACCAGATAGTCAAAATCATTGGGTTGATTCCTCACAGAAATTAACAGGACATGATGGTACAGCCATCCCAGAATATCCTTATGCACATGCTCTGAATCCATTGCCCCTTGGTCAAGAAAATCAACACCCGGTTATTGTAGATTTCATTCATCCCCCACAGGACATGAATGCTGGTACCTGCTTGAAACCCTTGCAGCTGCCAAAATCCTCTTTTAATATGGTTCCCAATCAACAGGTTTTAAGAGACGATACTCATTTGACTGAAGCAAAGAGTTTTGAATCTAATGGTTTGATTGGTGAAGGAATAGTGGTAAAAATTGAGGACAATGTTCAAAACCCTGGCACCCAGACTATATCTTTTTCAGTGCAAAATAAAATTGCTGAGAATGCATGCGAAGCTGCTGCTGCTTCTTCTGTTGAGTCTAACAATTTAAAGTCAAAACCTGAAGCAGACTGCGTGCATGTTGAGAAACTGGCTGATAAGGACCCTTCTGTTCCAGAAGATTCTAAACATTTAGTTGATCAATTCAGTTTCTTGCCTGAGTTGATTGCTTCTGTAAAAAAGGCTGCATTAGAAGATGCTGTGCAGTTGAAAGCTGCAGTCGATGAGCATGCTGATTCTCCGAATCACAATTCAGATACCAAAGATGAAACAACAAATGAAGTAGAACCAGCGAATGCTCATGGTGATTTAGAATTGGACTCTGAAAATGACCATGTAGATACTAATAAAATTGAGCCTACAAGGGCTGAGGAAGAAGCAATTGCTAAGGGATTACAGACTATTAAAAATGATGATTTGGAGGAGATCCGTGAGCTTGGTTCTGGAACCTATGGAGCTGTTTATCATGGGAAATGGAAAGGTTCCGACGTTGCCATTAAGAGAATAAAAGCCAGTTGTTTTGCTGGAAGGCCATCTGAAAGAGCAAGATTGATCGCAGACTTCTGGAAGGAGGCATTGATGTTGAGTTCATTGCATCATCCAAATGTTGTCTCCTTTTATGGCATTGTTCGTGATGGCCCCGATGGTTCTTTAGCAACAGTCACAGAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTGCATTTTGATTTGAAATGTGAGAATCTATTGGTCAATATGAGAGATCCTCAACGGCCTATCTGCAAGATTGGTGATTTGGGTTTATCAAAGGTTAAACAGCACACTCTAGTGTCTGGTGGAGTACGGGGGACCTTGCCTTGGATGGCTCCTGAACTTCTTAGTGGGAAAAGCAATATGGTGTCAGAGAAGATTGATGTCTACTCATTCGGTATAGTCATGTGGGAATTACTCACAGGGAATGAACCCTATGCTGATATGCATTGTGCTTCAATAATAGGAGGAATTGTGAACAACACTTTACGTCCTCAAATCCCAACTTGGTGTGATCCTGAGTGGAAATCTCTAATGGAAAGTTGTTGGGCTTCTGATCCTGTAGAAAGACCATCTTTTTCAGAAATTTCCAAGAAGCTGAGGAGTATGGCTGCTTCAATGAATTTGAAATAG 3291 0.4342 MCNKGFQCLSQCESVIDHRQGFIMDSPIRSPATGSGSGSGEDNRRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDISYEELMGRMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVVNMMEEYDKLGSGDGFTRLRIFLFSQSEQDGSSHFIDGDDSERRYVDALNSLNDGSNSDFRRLQQGEFSMMSPVEDIHVAADQFYNPINVESGIHSQRSGDLSMSPYNMHHLTVQHPQALGQRYNEMDAPWNPAYYSPRHHGLHDFPSSPSGTRYRVPFPELPDKCIDRVPEEYARHHVNHHPVYDNQPQYSENVMWMPAHGEKSAFPGNIIHSPHVVDENSICEQCRMGFHRGQPHLEHSNISNGVPQVGNLCAECPPPNRDTFAADAKLHSAIYPNEPSNDHRSVFNDTQNHERGWGLQHPTARVEESRVHVSLGHGSVTDAHNLPSNYVHQQAGPELGTELFPEQTVTPVPPIQFPPLEDCNVRYGNSASPYGVDSNYAVPRGLPPGFWRNTPVPVHIGPSYEAATSPQPVNGLMNAAGLIRGEASPGFFIGPDSQNHWVDSSQKLTGHDGTAIPEYPYAHALNPLPLGQENQHPVIVDFIHPPQDMNAGTCLKPLQLPKSSFNMVPNQQVLRDDTHLTEAKSFESNGLIGEGIVVKIEDNVQNPGTQTISFSVQNKIAENACEAAAASSVESNNLKSKPEADCVHVEKLADKDPSVPEDSKHLVDQFSFLPELIASVKKAALEDAVQLKAAVDEHADSPNHNSDTKDETTNEVEPANAHGDLELDSENDHVDTNKIEPTRAEEEAIAKGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERARLIADFWKEALMLSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPICKIGDLGLSKVKQHTLVSGGVRGTLPWMAPELLSGKSNMVSEKIDVYSFGIVMWELLTGNEPYADMHCASIIGGIVNNTLRPQIPTWCDPEWKSLMESCWASDPVERPSFSEISKKLRSMAASMNLK* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0553 1096 ProSitePatterns Protein kinases ATP-binding region signature. 829 850 IPR017441 GO:0005524
Gso17g0553 1096 Pfam PB1 domain 61 146 IPR000270 GO:0005515
Gso17g0553 1096 Pfam Protein tyrosine and serine/threonine kinase 824 1086 IPR001245 GO:0004672|GO:0006468
Gso17g0553 1096 SMART PB1_new 60 145 IPR000270 GO:0005515
Gso17g0553 1096 Gene3D Transferase(Phosphotransferase) domain 1 909 1095 - -
Gso17g0553 1096 CDD PB1_UP2 49 145 - -
Gso17g0553 1096 Gene3D - 64 148 - -
Gso17g0553 1096 PANTHER - 22 1096 - -
Gso17g0553 1096 PRINTS Tyrosine kinase catalytic domain signature 905 918 IPR001245 GO:0004672|GO:0006468
Gso17g0553 1096 PRINTS Tyrosine kinase catalytic domain signature 942 960 IPR001245 GO:0004672|GO:0006468
Gso17g0553 1096 PRINTS Tyrosine kinase catalytic domain signature 1013 1035 IPR001245 GO:0004672|GO:0006468
Gso17g0553 1096 PRINTS Tyrosine kinase catalytic domain signature 1057 1079 IPR001245 GO:0004672|GO:0006468
Gso17g0553 1096 SUPERFAMILY Protein kinase-like (PK-like) 815 1084 IPR011009 -
Gso17g0553 1096 ProSiteProfiles Protein kinase domain profile. 823 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0553 1096 SUPERFAMILY CAD & PB1 domains 62 152 - -
Gso17g0553 1096 SMART serkin_6 823 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0553 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672|GO:0006468
Gso17g0553 1096 MobiDBLite consensus disorder prediction 756 779 - -
Gso17g0553 1096 Gene3D Phosphorylase Kinase; domain 1 809 908 - -
Gso17g0553 1096 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 22 1096 - -
Gso17g0553 1096 CDD STKc_MAP3K-like 829 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0553 Gso-Chr17 5083745 5090042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0553 45 1096 MAP Kinase Kinase Kinase AT5G57610 54.189 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gso17g0553 PK_Tyr_Ser-Thr 2.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0553 - - gmx:100782903 2224.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0553 17 5083745 5090042 Gso17g0553 17 5083745 5090042 ECH
Gso13g0672 13 20929478 20936141 Gso17g0553 17 5083745 5090042 GST
Gso17g0553 17 5083745 5090042 Gso15g1673 15 25572323 25583969 PCT
Gso15g1673 15 25572323 25583969 Gso17g0553 17 5083745 5090042 PCT