Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0543 ATGAATTTCCATAACCCCAATACTTCTCTTCACCTAAGCCAACACGATGATGAGAACCATCTCAACCTAGATCTTCTTCTTGAGCCATCTTCTTCTTCTTCATCTTCACCTTCACCTATTTGTTCCATGGAGCCACGGATATTCTCATGCAACTATTGCCAGAGAAAGTTCTATAGCTCTCAAGCACTAGGGGGTCACCAAAATGCCCACAAGCTTGAAAGGACACTGGCCAAGAAGAGCAGGGAACTGAGTTTGAACATGCAATCTTATGGAGCAGCGGAGCAAAGATCAAACTTTGGTGCTTCACACCATCTTGGTCATCGTGCTCTTGGGGTTGTGGATAACCAAGGACAAAGTTATGTGAGGCTTGGTGGAAGGAAAGAGTTCAGTTATGGTTCCAAGGAAGGGGTAGGGGTGGCTTCCTGGTCAAGGGCTTCTGAACATGTTCAGGAGGATATGGGCCAACTTGACTTGTCGTTAAGGCTTTGA 489 0.4601 MNFHNPNTSLHLSQHDDENHLNLDLLLEPSSSSSSSPSPICSMEPRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELSLNMQSYGAAEQRSNFGASHHLGHRALGVVDNQGQSYVRLGGRKEFSYGSKEGVGVASWSRASEHVQEDMGQLDLSLRL* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0543 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Gso17g0543 162 Gene3D Classic Zinc Finger 30 103 - -
Gso17g0543 162 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Gso17g0543 162 PANTHER ZINC FINGER PROTEIN JAGGED 5 162 IPR045320 GO:0003700
Gso17g0543 162 PANTHER BNAC02G44440D PROTEIN 5 162 - -
Gso17g0543 162 SUPERFAMILY beta-beta-alpha zinc fingers 45 75 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0543 Gso-Chr17 5021491 5022768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0543 4 162 C2H2 Transcription Factor Family AT5G57520 48.171 2.75e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso17g0543 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0543 - - gmx:100781826 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0543 17 5021491 5022768 Gso17g0543 17 5021491 5022768 ECH
Gso13g0682 13 21008516 21009783 Gso17g0543 17 5021491 5022768 GST