Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0542 ATGCTAGCACCACCTTCAAGCAAAGTCGCAAATTCTCCTCCTACACCAACAAAAATGGCACCTTCTCCACAAGAAATCATCTTCCGATCCCCACTCCCCGATATTCCCATCCCCACACATCTCCCATTGTACTCTTACTGCTTCCAAAACTTGTCAAAGTTCCATGACCGTCCATGCCTCATCGACGGCGACACCGGCGAGACCCTCACCTACGCCGACGTCGACCTCGCTGCTCGCCGCATCGCCTCCGGCCTCCACAAAATCGGCATCCGCCAGGGTGACGTCATCATGCTCGTCCTACGCAACTGCCCGCAGTTCGCCCTCGCCTTCCTCGGCGCCACCCACCGTGGCGCCGTCGTCACCACAGCCAACCCCTTCTACACGCCGGCGGAGCTTGCGAAGCAAGCGACGGCCACGAAAACCAGGCTCGTCATAACGCAATCCGCGTACGTTGAGAAAATCAAGAGTTTCGCGGACAGCAGCAGCGATGTCATGGTGATGTGCATTGATGATGATTTTTCTTATGAAAACGACGGCGTTTTGCATTTCTCAACGCTCAGTAACGCCGACGAAACGGAAGCCCCTGCCGTTAAGATTAACCCTGACGAGCTCGTTGCGCTTCCGTTTTCTTCTGGCACGTCTGGGCTCCCCAAGGGCGTTATGTTATCGCATAAAAACTTGGTCACCACGATAGCGCAGTTAGTTGACGGCGAAAACCCGCACCAATACACTCACAGCGAGGATGTGCTACTCTGTGTGTTGCCTATGTTTCATATCTATGCGCTCAATTCCATTTTGCTCTGCGGGATTCGTTCCGGTGCGGCCGTGCTTATTTTGCAGAAGTTTGAGATCACTACTCTGTTGGAGCTCATCGAGAAGTACAAGGTGACGGTTGCGTCGTTTGTGCCGCCCATCGTTTTGGCGTTGGTTAAGAGCGGAGAGACTCATCGCTACGACCTGTCGTCTATTCGCGCTGTGGTCACCGGCGCGGCACCCTTAGGAGGGGAACTTCAAGAAGCCGTTAAGGCTAGGCTACCACACGCTACTTTTGGACAGGGATATGGGATGACAGAAGCAGGACCACTTGCCATTAGCATGGCATTTGCAAAAGTACCCTCTAAGATTAAACCAGGTGCATGCGGAACCGTTGTGAGAAACGCCGAGATGAAAATCGTGGATACAGAAACGGGTGATTCACTTCCAAGAAACAAACACGGTGAAATTTGCATAAGAGGCACAAAGGTCATGAAAGGATATCTAAATGACCCAGAGGCTACAGAGAGAACTGTAGACAAAGAAGGATGGTTACACACAGGAGATATTGGTTTCATTGATGATGATGATGAACTCTTCATTGTTGATCGGTTAAAGGAATTGATCAAATACAAAGGATTCCAAGTGGCTCCTGCTGAGCTTGAAGCATTGTTGATTGCCCACCCAAACATTTCTGATGCTGCCGTTGTAGGCATGAAAGATGAAGCTGCAGGGGAAATTCCAGTTGCATTTGTTGTAAGGTCAAATGGTTCTGAGATCGCCGAGGATGAAATCAAGAAATACATTTCACAACAGGTGGTTTTTTACAAGAGAATAGGTAGAGTTTTCTTCACGGACTCTATTCCTAAAGCACCCTCAGGCAAAATTCTGCGAAAGGTATTAACTGCAAGACTTAACGAAGGTTTGGTGGTGGCCAATTAG 1695 0.4991 MLAPPSSKVANSPPTPTKMAPSPQEIIFRSPLPDIPIPTHLPLYSYCFQNLSKFHDRPCLIDGDTGETLTYADVDLAARRIASGLHKIGIRQGDVIMLVLRNCPQFALAFLGATHRGAVVTTANPFYTPAELAKQATATKTRLVITQSAYVEKIKSFADSSSDVMVMCIDDDFSYENDGVLHFSTLSNADETEAPAVKINPDELVALPFSSGTSGLPKGVMLSHKNLVTTIAQLVDGENPHQYTHSEDVLLCVLPMFHIYALNSILLCGIRSGAAVLILQKFEITTLLELIEKYKVTVASFVPPIVLALVKSGETHRYDLSSIRAVVTGAAPLGGELQEAVKARLPHATFGQGYGMTEAGPLAISMAFAKVPSKIKPGACGTVVRNAEMKIVDTETGDSLPRNKHGEICIRGTKVMKGYLNDPEATERTVDKEGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPNISDAAVVGMKDEAAGEIPVAFVVRSNGSEIAEDEIKKYISQQVVFYKRIGRVFFTDSIPKAPSGKILRKVLTARLNEGLVVAN* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0542 564 Gene3D - 457 560 IPR045851 -
Gso17g0542 564 SUPERFAMILY Acetyl-CoA synthetase-like 27 558 - -
Gso17g0542 564 Gene3D - 22 456 IPR042099 -
Gso17g0542 564 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 22 556 - -
Gso17g0542 564 CDD 4CL 37 552 - -
Gso17g0542 564 Pfam AMP-binding enzyme 50 462 IPR000873 -
Gso17g0542 564 ProSitePatterns Putative AMP-binding domain signature. 207 218 IPR020845 -
Gso17g0542 564 Pfam AMP-binding enzyme C-terminal domain 471 546 IPR025110 -
Gso17g0542 564 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 22 556 - -
Gso17g0542 564 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0542 Gso-Chr17 5001994 5007764 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0542 25 524 Monolignol Biosynthesis Gene Families AT1G51680 65.217 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0542 K01904 - gmx:548034 1078.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0542 17 5001994 5007764 Gso17g0542 17 5001994 5007764 ECH