Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0541 ATGGAAGAGCAACAAGCTCACCACGACTTCATTTTCCATTCCAAACTCCCCGACATTTACATCCCATCGCACCTCCCTCTCCACACCTACATTTTCCAAAACCTTTCCCAATTCAAACACCGTCCCTGCCTCATCAACGGGACCACCGGCGAGACCTTCTCCTACCACGCCATCCAACTCACCGCCCGCAGAGTCGCCTCCGGTCTCAACAAACTCGGCATCCAAAAAGGCGACGTCATCCTCCTCCTCCTCCAGAACTGCCCCCAATTCGTCCTCGCATTCCTCGGCGCCTCCTACCGCGGTGCCACTGTCACCACCGCCAATCCCTTCTACACTCCGGCGGAGGTAGCGAAACAAGCCACAGCGTCCAACTCCAAACTCATCATAACGCAAGCATCTTACGTGGATAAAGTCAAGGATTTCGCGAGAGAAAACGACGTCAAAGTGATATGCGTTGACTCGGCGCCGGAAGGATACCTTCCCTTCTCGGAGTTAACGGAGGCCGACGAGGGAGACATTCCCGCCGTTAAAATATCTCAAGATGACGTGGTTGCGCTGCCGTACTCGTCTGGCACGACGGGGCTTCCGAAGGGAGTGATGCTAACGCACAAGGGACTCGTTACGAGCGTGGCTCAACAGGTTGACGGAGAGAACCCTAATTTGTATTTTCGGAGCAGCGATGTGGTTTTGTGCTTGCTTCCACTTTTCCACATTTATGCTCTCAACTCTGTTTTGCTGTGTTCCCTTCGAGTAGGGGCTTCCGTTTTGATCGTGCCGAAATTTGAGATCATTACGTTGCTGGAGTTGATCCAGAAACACAAGGTGAGCATCGCGCCGTTTGTGCCGCCCATCGTATTGACCGTTGCAAAGAGTCCCGATTTGGAGCGATACGACTTGTCGTCGATTCGAATGATTATGTCGGGTGCGGCACCTATGGGCAAAGAACTTGAGGATTCTCTCAGGGCCAAACTTCCCAACGCCATACTCGGACAGGGTTACGGGATGACAGAGGCAGGGCCAGTGCTATCAATGTGCTTAGCGTTTGCGAAGGAGCCAATGCAGGTGAAATCAGGTGCCTGCGGGACTGTCGTAAGAAATGCGGAGATGAAGATCGTTGACCCTCGAACTGGTGCTTCGCTTCATAGAAATCAAGCTGGTGAGATTTGCATCAGAGGCAACCAGATCATGAAAGGTTACCTAAATGATCAAGAGGCCACACAAAGAACTATAGACAAGGAAGGATGGTTGCATACCGGCGATATTGGATACATTGACGATGATGATGAGCTTTTCGTAGTTGATCGGTTAAAGGATCTTATCAAATACAAAGGATTTCAAGTGGCTCCAGCTGAGCTCGAAGCCATTTTAATTGCTCACCCAAGCATTTCTGATGCTGCTGTTGTGTCCATGAAGGATGAAGTTGCGGGAGAGGTTCCTATTGCATTTCTTGTACGATCAAATGGTTCTAAGGTCACCGAGGATGAAATCATGCGATACATCTCAAAGCAGGTTGTGTTTTACAAAAGAATCAGTAGGGTTTTCTTTGTGGGCTCAATTCCAAAGGCCCCCTCTGGAAAGATCTTGCGGAAAGACCTTAGGGCAAGGTATTGA 1611 0.5022 MEEQQAHHDFIFHSKLPDIYIPSHLPLHTYIFQNLSQFKHRPCLINGTTGETFSYHAIQLTARRVASGLNKLGIQKGDVILLLLQNCPQFVLAFLGASYRGATVTTANPFYTPAEVAKQATASNSKLIITQASYVDKVKDFARENDVKVICVDSAPEGYLPFSELTEADEGDIPAVKISQDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFRSSDVVLCLLPLFHIYALNSVLLCSLRVGASVLIVPKFEIITLLELIQKHKVSIAPFVPPIVLTVAKSPDLERYDLSSIRMIMSGAAPMGKELEDSLRAKLPNAILGQGYGMTEAGPVLSMCLAFAKEPMQVKSGACGTVVRNAEMKIVDPRTGASLHRNQAGEICIRGNQIMKGYLNDQEATQRTIDKEGWLHTGDIGYIDDDDELFVVDRLKDLIKYKGFQVAPAELEAILIAHPSISDAAVVSMKDEVAGEVPIAFLVRSNGSKVTEDEIMRYISKQVVFYKRISRVFFVGSIPKAPSGKILRKDLRARY* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0541 536 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Gso17g0541 536 SUPERFAMILY Acetyl-CoA synthetase-like 7 536 - -
Gso17g0541 536 Gene3D - 2 436 IPR042099 -
Gso17g0541 536 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Gso17g0541 536 Pfam AMP-binding enzyme 34 442 IPR000873 -
Gso17g0541 536 Gene3D - 437 536 IPR045851 -
Gso17g0541 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 535 - -
Gso17g0541 536 CDD 4CL 21 532 - -
Gso17g0541 536 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 7 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0541 Gso-Chr17 4988173 4991342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0541 1 504 Monolignol Biosynthesis Gene Families AT1G51680 68.738 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0541 K01904 - gmx:100780741 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0541 17 4988173 4991342 Gso17g0541 17 4988173 4991342 ECH
Gso13g0683 13 21022945 21029944 Gso17g0541 17 4988173 4991342 GST