Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0534 ATGGATACTGATGAGGAGTGTTCAATTGTTCTTGAATTATCTGAAAGAGATCCTTTCTTTGACAAAAAGAAGAAATTACTACAAAGTAAGGGCTTTAGTCCCAAAGAACGGATATACCTCAAGAGCTCTTCAAAACCTGGCTGGATGAATGCTACTGTGGAGGTCTTACTTCAGATTGCACGAATCGTACAATTAAATGAGCTGGAACTTTATTTTGCTGAAGATGATGTATGCACGTCAATGGAGTCTTACAGTCCCAGGAATGAGCTGGAGGCTCTCAATTCAATTGTTTTGCTCACTGACATATCACTTTCTACTTGTACACATCTGCATACAAATATCTTGCAAGGGTTACGCCAAACAATTCTTGATTTAATTTCTGATTTTGGGGACAAAAACAGTGTGAAGGGAGTAGTTGAAAAAAACCACAGTTGTGACCAAGAAGAACGCCTGCTAGAATGGGGTGAAAGCAATGGTTTAATGACACAGTTAAAAATAGCTTATATTGAAGGAGCCAGTCGGGGTGCAATAGCAAGGAAAGATCTAAAAGTTGGAGACATTGCTTTGGAAATTCCCGTGTCCATTATCATTTCCGAAGAGCTTGTGCATGAAACCGATATGTATGGTGTCTTAAAAGAGATTGATGGCATATCATCTGAGACAATATTGCTATTATGGAGTATGAAAGAAAAGTACAACTGTGATTCAAAATTCAAAATTTACTTTGACACACTCCCAGAAAAATTTAATACAGGTTTGAGTTTCAGCATTCAAGCAATTACAATGTTAGATGGAACCTTGCTGTTGGAAGAGATAATGCAAGCAAGACAGCACTTGCATGCTCAATATGATGAGTTGTTCCCTGCTCTGTGCAATAATTTTCCTGATATATTTCCACCAGAGCTGTACACATGGGAGAAATTTTTATGGGCTTGTGAACTTTGGTACTCTAATAGCATGAAGATCATGTATTCTGATGGAAAGCTAAGAACATGCTTGATCCCTCTTGCTGGCTTTCTCAATCATTCACTATGCCCACATGTTATGCACTATGGCAAAGTGGATCCCGCAACAAATTCCCTGAAATTTTGTCTATCAAGACCATGCAGATCTGGAGAAGAATGCTGCTTAAGCTACGGGAACTTCTCCAGCTCTCATCTAATTACCTTTTATGGTTTCTTACCACAAGGAGACAACTCGTATGATGTTATTCCGTTAGACATTGACGGTTCTGACGTTGATTCTAATGAGGATATACCTGTGTCCAACTGGACGACTCACATGGTGCGTGGTACTTGGCTCTCCAAGGATCACAGGATATTCAATTATGGCCTTCCCTCTCCATTATTGGACCATCTTAGGAGATCTCGAAGTCCCATGCTAAGAACAAAGACTTTTTTGCAAGGAAGCTTGGAAAATGAGCTGGAAGTTCTTGAAAATCTCAAAGATATCTTTGATGATATGATGGAAAATATGGGCAAGATCGATCTTGACGACAGAGAAAACTGCAGTTGGGATGAAAAATTGGCTATGGATTTTAAAGATCTACAAAGACGAATTGCCTGTTCTGTTTCCACTTCGTGTCACACAGGCATGGACATGTTGAAGAACGAACTATGCAAGTGCATGGCTGAGGACATCCTAGGCTAA 1650 0.3964 MDTDEECSIVLELSERDPFFDKKKKLLQSKGFSPKERIYLKSSSKPGWMNATVEVLLQIARIVQLNELELYFAEDDVCTSMESYSPRNELEALNSIVLLTDISLSTCTHLHTNILQGLRQTILDLISDFGDKNSVKGVVEKNHSCDQEERLLEWGESNGLMTQLKIAYIEGASRGAIARKDLKVGDIALEIPVSIIISEELVHETDMYGVLKEIDGISSETILLLWSMKEKYNCDSKFKIYFDTLPEKFNTGLSFSIQAITMLDGTLLLEEIMQARQHLHAQYDELFPALCNNFPDIFPPELYTWEKFLWACELWYSNSMKIMYSDGKLRTCLIPLAGFLNHSLCPHVMHYGKVDPATNSLKFCLSRPCRSGEECCLSYGNFSSSHLITFYGFLPQGDNSYDVIPLDIDGSDVDSNEDIPVSNWTTHMVRGTWLSKDHRIFNYGLPSPLLDHLRRSRSPMLRTKTFLQGSLENELEVLENLKDIFDDMMENMGKIDLDDRENCSWDEKLAMDFKDLQRRIACSVSTSCHTGMDMLKNELCKCMAEDILG* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0534 549 Pfam SET domain 174 380 IPR001214 GO:0005515
Gso17g0534 549 Pfam Rubisco LSMT substrate-binding 15 98 IPR015353 -
Gso17g0534 549 Gene3D - 2 109 IPR036464 -
Gso17g0534 549 CDD SET_LSMT 164 394 - -
Gso17g0534 549 ProSiteProfiles SET domain profile. 162 380 IPR001214 GO:0005515
Gso17g0534 549 PANTHER BNAA07G01600D PROTEIN 3 545 - -
Gso17g0534 549 SUPERFAMILY SET domain 148 401 IPR046341 -
Gso17g0534 549 Gene3D set domain protein methyltransferase, domain 1 110 393 - -
Gso17g0534 549 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 3 545 - -
Gso17g0534 549 Coils Coil 471 491 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso17g0534 SET 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0534 K19199 - gmx:100778605 1115.14