Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0525 ATGGACTCTTCTTCTTCATCACCGCCAAACAGCACCAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTTCCCAACCCTTCTTCCTCTCCCCTTTCTCTCTTCCACTCCTTCACCTATCCATCTCTCTCTCTCACAGGCAGCAACACGGTGGACGCACCGCCTGAGCCCACCGCTGGAGCAGGACCGACCAACCTCTCCATATTCACCGGCGGCCCCAAGTTCGAGGACTTTCTGGGCGGTTCCGCCGCAACAGCCACCACCGTCGCGTGTGCACCGCCACAGCTTCCGCAGTTCTCCACCGACAACAACAACCACCTATACGATTCGGAGCTGAAGTCAACAATAGCCGCGTGCTTCCCTCGCGCCTTGGCCGCCGAACAAAGCACCGAACCGCAAAAACCATCCCCCAAGAAAACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCGACATAGATGGACTGGGAGATACGAAGCTCATCTATGGGACAATAGTTGCAGAAGGGAAGGTCAAAGCAGGAAAGGAAGGCAAGTTTACTTGGGTGGTTATGACAAGGAGGATAAGGCAGCCAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACTAACTTTCCTATTTCCAACTATGAGAAGGAACTGGAGGAGATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCTCTTCGTAGGAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTAACAAACTTTGACATGAGTCGCTACGACGTGAAGAGCATTGCAAATAGTACTCTTCCTATTGGTGGTTTATCTGGCAAGAACAAGAACTCCACAGATTCTGCATCTGAGAGCAAAAGCCATGAGCCAAGCCAATCCGATGGAGATCCATCATCGGCTTCATCGGTGACCTTTGCATCACAGCAACAACCTTCAAGCTCCAACTTAAGCTTTGCCATACCCATTAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCATAATACTCCCCTTGACAACAGTGGCATCAGGAACACTACTAGTACTGTTACTACAACTACTTTTCCATCCTCCAACAATGGCACTGCTAGTAGTTTGACACCCTTCAACATGGAGTTCTCAAGTGCCCCCTCAAGTACCGGCAGCGATAACAATGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAACAAACTAGTCATGGTCATGGAAATGCAAGCAGTGGTTCCTCCTCTTCTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATATTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTATGGAAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGAATGGAATGA 1593 0.4972 MDSSSSSPPNSTNNNSLAFSLSNHFPNPSSSPLSLFHSFTYPSLSLTGSNTVDAPPEPTAGAGPTNLSIFTGGPKFEDFLGGSAATATTVACAPPQLPQFSTDNNNHLYDSELKSTIAACFPRALAAEQSTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSGKNKNSTDSASESKSHEPSQSDGDPSSASSVTFASQQQPSSSNLSFAIPIKQDPSDYWSILGYHNTPLDNSGIRNTTSTVTTTTFPSSNNGTASSLTPFNMEFSSAPSSTGSDNNAAFFSGGGIFVQQQTSHGHGNASSGSSSSSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME* 531
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0525 530 MobiDBLite consensus disorder prediction 351 366 - -
Gso17g0525 530 CDD AP2 252 313 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 ProSiteProfiles AP2/ERF domain profile. 151 217 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 ProSiteProfiles AP2/ERF domain profile. 253 311 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 529 - -
Gso17g0525 530 SUPERFAMILY DNA-binding domain 252 313 IPR016177 GO:0003677
Gso17g0525 530 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g0525 530 Pfam AP2 domain 151 209 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 Pfam AP2 domain 253 303 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 CDD AP2 150 219 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 PRINTS Ethylene responsive element binding protein signature 293 313 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 SUPERFAMILY DNA-binding domain 150 219 IPR016177 GO:0003677
Gso17g0525 530 MobiDBLite consensus disorder prediction 326 366 - -
Gso17g0525 530 Gene3D AP2/ERF domain 253 313 IPR036955 GO:0003700|GO:0006355
Gso17g0525 530 Gene3D AP2/ERF domain 151 219 IPR036955 GO:0003700|GO:0006355
Gso17g0525 530 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL5 16 529 - -
Gso17g0525 530 SMART rav1_2 151 223 IPR001471 GO:0003700|GO:0006355
Gso17g0525 530 SMART rav1_2 253 317 IPR001471 GO:0003700|GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso17g0525 Gso-Chr17 4826912 4830717 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0525 108 398 AP2-EREBP Transcription Factor Family AT5G57390 70.253 1.76e-145 424
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gso17g0525 AP2 2.6e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0525 K09285 - gmx:100803558 978.778
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0525 17 4826912 4830717 Gso17g0525 17 4826912 4830717 ECH
Gso13g0696 13 21158121 21161950 Gso17g0525 17 4826912 4830717 GST