LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g0525	ATGGACTCTTCTTCTTCATCACCGCCAAACAGCACCAACAACAACTCCCTCGCTTTCTCTCTTTCCAATCACTTTCCCAACCCTTCTTCCTCTCCCCTTTCTCTCTTCCACTCCTTCACCTATCCATCTCTCTCTCTCACAGGCAGCAACACGGTGGACGCACCGCCTGAGCCCACCGCTGGAGCAGGACCGACCAACCTCTCCATATTCACCGGCGGCCCCAAGTTCGAGGACTTTCTGGGCGGTTCCGCCGCAACAGCCACCACCGTCGCGTGTGCACCGCCACAGCTTCCGCAGTTCTCCACCGACAACAACAACCACCTATACGATTCGGAGCTGAAGTCAACAATAGCCGCGTGCTTCCCTCGCGCCTTGGCCGCCGAACAAAGCACCGAACCGCAAAAACCATCCCCCAAGAAAACCGTCGACACCTTCGGGCAACGCACCTCCATCTACCGCGGCGTGACCCGACATAGATGGACTGGGAGATACGAAGCTCATCTATGGGACAATAGTTGCAGAAGGGAAGGTCAAAGCAGGAAAGGAAGGCAAGTTTACTTGGGTGGTTATGACAAGGAGGATAAGGCAGCCAGAGCTTATGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACTAACTTTCCTATTTCCAACTATGAGAAGGAACTGGAGGAGATGAAGAACATGACTAGGCAAGAGTTTGTTGCTTCTCTTCGTAGGAAGAGCAGTGGTTTCTCTAGAGGGGCCTCTATATACAGAGGAGTAACGAGACACCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGCACCCAAGAAGAAGCTGCTGAGGCCTATGACATTGCTGCTATCAAATTCAGGGGATTAAATGCAGTAACAAACTTTGACATGAGTCGCTACGACGTGAAGAGCATTGCAAATAGTACTCTTCCTATTGGTGGTTTATCTGGCAAGAACAAGAACTCCACAGATTCTGCATCTGAGAGCAAAAGCCATGAGCCAAGCCAATCCGATGGAGATCCATCATCGGCTTCATCGGTGACCTTTGCATCACAGCAACAACCTTCAAGCTCCAACTTAAGCTTTGCCATACCCATTAAGCAAGACCCTTCAGATTACTGGTCCATCTTGGGGTACCATAATACTCCCCTTGACAACAGTGGCATCAGGAACACTACTAGTACTGTTACTACAACTACTTTTCCATCCTCCAACAATGGCACTGCTAGTAGTTTGACACCCTTCAACATGGAGTTCTCAAGTGCCCCCTCAAGTACCGGCAGCGATAACAATGCCGCGTTTTTCAGTGGAGGAGGCATCTTTGTTCAGCAACAAACTAGTCATGGTCATGGAAATGCAAGCAGTGGTTCCTCCTCTTCTTCTTTAAGCTGTTCAATCCCATTCGCCACGCCCATATTTTCTCTAAATAGCAATACTAGTTATGAGAGCAGTGCTGGTTATGGAAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCAAGTCTCTTTCAAACGCCAATATTTGGAATGGAATGA	1593	0.4972	MDSSSSSPPNSTNNNSLAFSLSNHFPNPSSSPLSLFHSFTYPSLSLTGSNTVDAPPEPTAGAGPTNLSIFTGGPKFEDFLGGSAATATTVACAPPQLPQFSTDNNNHLYDSELKSTIAACFPRALAAEQSTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSGKNKNSTDSASESKSHEPSQSDGDPSSASSVTFASQQQPSSSNLSFAIPIKQDPSDYWSILGYHNTPLDNSGIRNTTSTVTTTTFPSSNNGTASSLTPFNMEFSSAPSSTGSDNNAAFFSGGGIFVQQQTSHGHGNASSGSSSSSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME*	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g0525	530	MobiDBLite	consensus disorder prediction	351	366	-	-
	Gso17g0525	530	CDD	AP2	252	313	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	ProSiteProfiles	AP2/ERF domain profile.	151	217	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	ProSiteProfiles	AP2/ERF domain profile.	253	311	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	16	529	-	-
	Gso17g0525	530	SUPERFAMILY	DNA-binding domain	252	313	IPR016177	GO:0003677
	Gso17g0525	530	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gso17g0525	530	Pfam	AP2 domain	151	209	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	Pfam	AP2 domain	253	303	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	CDD	AP2	150	219	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	PRINTS	Ethylene responsive element binding protein signature	152	163	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	PRINTS	Ethylene responsive element binding protein signature	293	313	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	SUPERFAMILY	DNA-binding domain	150	219	IPR016177	GO:0003677
	Gso17g0525	530	MobiDBLite	consensus disorder prediction	326	366	-	-
	Gso17g0525	530	Gene3D	AP2/ERF domain	253	313	IPR036955	GO:0003700\|GO:0006355
	Gso17g0525	530	Gene3D	AP2/ERF domain	151	219	IPR036955	GO:0003700\|GO:0006355
	Gso17g0525	530	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL5	16	529	-	-
	Gso17g0525	530	SMART	rav1_2	151	223	IPR001471	GO:0003700\|GO:0006355
	Gso17g0525	530	SMART	rav1_2	253	317	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g0525	Gso-Chr17	4826912	4830717	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g0525	108	398	AP2-EREBP Transcription Factor Family	AT5G57390	70.253	1.76e-145	424

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Gso17g0525		AP2	2.6e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g0525	K09285		-	gmx:100803558	978.778

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso17g0525	17	4826912	4830717	Gso17g0525	17	4826912	4830717	ECH
	Gso13g0696	13	21158121	21161950	Gso17g0525	17	4826912	4830717	GST