Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0524 ATGGCTACAGATTCGTCTTTTGAGGGCCTTGCACTTGATCCTTCTAAGTGCAGTAAATTGAGTATGGAAGAAAAAAGAGAACTTGTATATGAAGTATCTAAGTGGTCGCATGGTGCATCTGAGATGCTGCAGTCATGGAGCCGTCAAGAGATTTTGCAAATATTGTGTGCAGAAATGGGGAAAGAGAGAAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGGGGGAATGAAACTGCGACAGACCCTGAACCACAATCTTCTCCTGCACCTGGTCAGAAGCCTGCTAAAAGGCAGAGAAAATCTGAGAATCCTTCACACGTGCCTGTTCCTGCGACCAGCATTACAGTCAATAATGGTGGTGATTCTGTTAACACCGCATACTGCAAAAACTCAGCTTGCAAAGCTACCCTGAATCAATCATATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCGGGAATTGCCAAGGATGGTGAGCATCCCAAGCTTGATGGAGGGTTCTACTGTGTCTCTTGCGGGAAAGTAAATGATTTACTTGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGCGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAGTGTATGAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTCATTGGCTCACCGGTGAAGATTGGAAGGGGAATTGTGAACAGGCTTTCTTCTGGACCTGAGGTTCAGAAACTCTGTGGTTTTGCTCTGGAATCACTTGATTCACTACTTTCGAAAAGAATTTTGCCTTCGTCACCCAAGCCAACAACTCAAGATGCACATTTGCTGGCTCCAAATATGGTGAGGTTTGAAGACGTCACTGCCACAACCCTCACTATTATTTTGGGTTCTGAAGAACCCTCTGGTGAAATTATTGCTGGTTACACCTTGTGGCATCGCAAAGTTGATGATGTGGACTACCCCACCGACCCAACTTTCACCTCGCTCCTACCAAATAGAAGGTTCCGTGTCTCGGGTCTAATTCCAGGCACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGGAGTCAGGTATGTGCGAAGTTCAAGTCTCAACAGAGCATGGCGAGGAAGAAGTCCCTAATTGCTCTGCAACAGAAAGAAGTCAGAGCCCAGTAACCAACTGTAGCAGCCTTTCCAATCCGTCATCAGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGATCTGACTGATAACCGAGCAGACCATTATCCTTCTTATCACAAGGATAGCAACCAACTTGCTTCTGGAAATTTATCCAATGATGTTATTAACTGTTCCAATCTAGGCAGTGTGGGACTTCCTCCTGATGCAGATTCTTTGTCAGACAAGCAGCATGCTGGAGGAACGACTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTCGAAAACAAGCATTCACCAGAGGAACAAGTCACTGAGGACATGAGCACTGATGATGGGTTGAATTCCCCAGCTCTAACAGGGAGGGAATGTGTGCCGTTAGTAGGTAGCTCAAAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAAGAATAAAAGATCTAAGTCGAGTGGCAAAGATCAAGAAAATGTATCCGGGAAAAGGGAGGGCCCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGAGGAGGGCCGTGTTGCAAATGGCTTTTCGGATCGGGATTTTGAGTATTATGTGAAGGTAATTAGGTGGTTAGAGTGTGAAGGACACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACATCTCAAGAAGTAAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCAGCATCTCTTGCAGAGCAACTTGTGGACACCTTTTCAGAATGTATATCCAGCAAGAGAACATCAGTGGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2214 0.4345 MATDSSFEGLALDPSKCSKLSMEEKRELVYEVSKWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPQSSPAPGQKPAKRQRKSENPSHVPVPATSITVNNGGDSVNTAYCKNSACKATLNQSYAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIAKDGEHPKLDGGFYCVSCGKVNDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEVYEELYKIVDEAVKKLEPEVGPLIGSPVKIGRGIVNRLSSGPEVQKLCGFALESLDSLLSKRILPSSPKPTTQDAHLLAPNMVRFEDVTATTLTIILGSEEPSGEIIAGYTLWHRKVDDVDYPTDPTFTSLLPNRRFRVSGLIPGTEYSFKVVSNDLRESGMCEVQVSTEHGEEEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNRADHYPSYHKDSNQLASGNLSNDVINCSNLGSVGLPPDADSLSDKQHAGGTTASIPSSDVLKLENKHSPEEQVTEDMSTDDGLNSPALTGRECVPLVGSSKGGLPNTPCKLETLKDGPGKNKRSKSSGKDQENVSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATSQEVRIVKIYIDTFLEDPASLAEQLVDTFSECISSKRTSVVPAGFCMKLWH* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0524 737 CDD FN3 346 420 IPR003961 GO:0005515
Gso17g0524 737 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Gso17g0524 737 MobiDBLite consensus disorder prediction 599 644 - -
Gso17g0524 737 MobiDBLite consensus disorder prediction 435 499 - -
Gso17g0524 737 Pfam Fibronectin type III domain 346 420 IPR003961 GO:0005515
Gso17g0524 737 ProSiteProfiles Fibronectin type-III domain profile. 346 441 IPR003961 GO:0005515
Gso17g0524 737 MobiDBLite consensus disorder prediction 529 545 - -
Gso17g0524 737 Gene3D Immunoglobulins 329 431 IPR013783 -
Gso17g0524 737 MobiDBLite consensus disorder prediction 520 644 - -
Gso17g0524 737 MobiDBLite consensus disorder prediction 86 129 - -
Gso17g0524 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 737 - -
Gso17g0524 737 CDD PHD_VIN3_plant 161 226 - -
Gso17g0524 737 SMART FN3_2 344 428 IPR003961 GO:0005515
Gso17g0524 737 SUPERFAMILY Fibronectin type III 345 421 IPR036116 GO:0005515
Gso17g0524 737 MobiDBLite consensus disorder prediction 440 481 - -
Gso17g0524 737 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 737 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0524 Gso-Chr17 4801517 4806666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0524 4 509 PHD Gene Family AT4G30200 52.974 2.75e-165 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0524 - - gmx:100794721 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0524 17 4801517 4806666 Gso17g0524 17 4801517 4806666 ECH
Gso13g0697 13 21189176 21194356 Gso17g0524 17 4801517 4806666 GST