Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0523 ATGAGGTATATTCGGAGCAACAGCTTCAAGAGGTTCTTCTCATTCAGAAGACGCAGTTCAAGGGAACAGATTCTGAGTCCCAACAGTAAGGGTGAAGGAAACAATGAGATTCTTCCGCATGAAGAAGAACCTTCTCGAAGACCCTCTTGGAAGTGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGCTTCAGCTCAGAAAATTTGGTGGGAAAAGGAGGGTATGCAGAGGTTTACAAGGGAACAATGAATGGTGGTGAGGAAATTGCTGTGAAGAGACTCACAAGAACTTCGAGGGATGAGAGAAAGGAGAAAGAGTTTTTGACAGAGATTGGTACAATTGGTCATGTGAACCATTCCAACGTTTTACCTCTTTTGGGGTGTTGTATTGATAATGGTCTTTACCTTGTTTTTGAGCTATCTTCCAGAGGTTCTGTTGCATCTCTTATTCATGATGAAAAATTGCCTCCTCTAGATTGGAAAACGAGACATAAGATAGCTATTGGAACTGCACGTGGCCTTCACTACTTGCATAAGGATTGCAAGAGGAGGATAATCCACCGGGACATCAAGTCTTCAAACATTTTGTTAACAAAGGATTTTGAACCACAGATATCTGATTTTGGCCTAGCAAAATGGCTTCCATCTCAATGGACTCATCATTCAATTGGCCCTATAGAAGGGACATTTGGACATTTGGCCCCAGAGTACTACTTGCATGGTGTTGTGGATGAGAAGACAGATGTGTTTGCCTTTGGTGTGTTCATGCTAGAAGTAATCTCTGGCAGAAAACCAGTGGATGGGTCTCACCAAAGCTTACATAGCTGGGCTAAACCAATTTTGAACAAGGGTGAGATAGAAGAGTTGGTGGATCCAAGGCTTGAAGGGGCTTATGATGTGACACAGTTAAAGAGATTTGCCTTCGCTGCCTCTCTTTGCATTCGGGCATCTTCAACTTGGCGACCTACCATGAGTGAGGTATTAGAGATAATGGAGGAAGGAGAGACGGATATAGAGAAGTGGAAAATGCCAGAGGAAGAAGAAGAACAAGAGGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAATATGACAGCTCCTTTTCAATGTCTTTACTTGACTCCATTGGAAGTACTTAA 1143 0.4278 MRYIRSNSFKRFFSFRRRSSREQILSPNSKGEGNNEILPHEEEPSRRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTMNGGEEIAVKRLTRTSRDERKEKEFLTEIGTIGHVNHSNVLPLLGCCIDNGLYLVFELSSRGSVASLIHDEKLPPLDWKTRHKIAIGTARGLHYLHKDCKRRIIHRDIKSSNILLTKDFEPQISDFGLAKWLPSQWTHHSIGPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFMLEVISGRKPVDGSHQSLHSWAKPILNKGEIEELVDPRLEGAYDVTQLKRFAFAASLCIRASSTWRPTMSEVLEIMEEGETDIEKWKMPEEEEEQEEEFWGFEDLEYEYDSSFSMSLLDSIGST* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0523 380 CDD STKc_IRAK 71 334 - -
Gso17g0523 380 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Gso17g0523 380 Gene3D Phosphorylase Kinase; domain 1 36 141 - -
Gso17g0523 380 ProSiteProfiles Protein kinase domain profile. 65 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0523 380 Gene3D Transferase(Phosphotransferase) domain 1 143 357 - -
Gso17g0523 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Gso17g0523 380 SUPERFAMILY Protein kinase-like (PK-like) 41 332 IPR011009 -
Gso17g0523 380 PANTHER OS08G0249100 PROTEIN 17 362 - -
Gso17g0523 380 Pfam Protein tyrosine and serine/threonine kinase 68 273 IPR001245 GO:0004672|GO:0006468
Gso17g0523 380 PANTHER OS04G0654600 PROTEIN 17 362 - -
Gso17g0523 380 MobiDBLite consensus disorder prediction 23 46 - -
Gso17g0523 380 SMART serkin_6 65 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0523 Gso-Chr17 4780428 4785850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0523 53 333 Trihelix Transcription Factor Family AT1G70460 44.828 3.85e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso17g0523 PK_Tyr_Ser-Thr 4.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0523 - - gmx:100305398 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0523 17 4780428 4785850 Gso17g0523 17 4780428 4785850 ECH
Gso13g0700 13 21212174 21217218 Gso17g0523 17 4780428 4785850 GST
Gso17g0523 17 4780428 4785850 Gso15g1325 15 13813679 13818069 PCT
Gso17g0523 17 4780428 4785850 Gso9g0469 9 4864405 4868962 PCT
Gso15g1325 15 13813679 13818069 Gso17g0523 17 4780428 4785850 PCT
Gso9g0469 9 4864405 4868962 Gso17g0523 17 4780428 4785850 PCT